##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548102_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2189669 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46715736488026 31.0 31.0 33.0 30.0 34.0 2 31.869928285964683 31.0 31.0 34.0 30.0 34.0 3 31.96488556032898 33.0 31.0 34.0 30.0 34.0 4 35.678028048988224 37.0 35.0 37.0 33.0 37.0 5 35.551880672375596 37.0 35.0 37.0 33.0 37.0 6 35.605838599349944 37.0 35.0 37.0 33.0 37.0 7 36.044350995515764 37.0 35.0 37.0 35.0 37.0 8 36.09273821751141 37.0 35.0 37.0 35.0 37.0 9 37.927700031374606 39.0 38.0 39.0 35.0 39.0 10 37.289372960022725 39.0 37.0 39.0 34.0 39.0 11 36.8558704534795 39.0 37.0 39.0 32.0 39.0 12 36.21223116370557 38.0 35.0 39.0 32.0 39.0 13 35.91063626511587 38.0 35.0 39.0 31.0 39.0 14 36.85540188950933 39.0 35.0 41.0 31.0 41.0 15 37.14252245430702 39.0 35.0 41.0 32.0 41.0 16 37.28626381430253 39.0 35.0 41.0 32.0 41.0 17 37.24135611364092 39.0 35.0 41.0 32.0 41.0 18 37.20104865164552 39.0 35.0 41.0 32.0 41.0 19 37.1660940534848 39.0 35.0 41.0 32.0 41.0 20 37.04003984163816 39.0 35.0 41.0 32.0 41.0 21 36.901448575104276 39.0 35.0 41.0 32.0 41.0 22 36.83113338134668 38.0 35.0 41.0 31.0 41.0 23 36.77231033548906 38.0 35.0 41.0 31.0 41.0 24 36.78796429962702 38.0 35.0 41.0 31.0 41.0 25 36.785177577067586 38.0 35.0 41.0 31.0 41.0 26 36.66355097505605 38.0 35.0 41.0 31.0 41.0 27 36.596335336528035 38.0 35.0 41.0 31.0 41.0 28 36.582852476789874 38.0 35.0 40.0 31.0 41.0 29 36.550859056779814 38.0 35.0 40.0 31.0 41.0 30 36.470312179603404 38.0 35.0 40.0 31.0 41.0 31 36.3819335251127 38.0 35.0 40.0 30.0 41.0 32 36.283594004390615 38.0 35.0 40.0 30.0 41.0 33 36.20716829803957 38.0 35.0 41.0 30.0 41.0 34 36.12504675364176 38.0 35.0 40.0 30.0 41.0 35 36.03914472918053 38.0 35.0 40.0 30.0 41.0 36 35.88472367284736 38.0 35.0 40.0 30.0 41.0 37 35.812013596575554 38.0 35.0 40.0 29.0 41.0 38 35.70545822222446 38.0 35.0 40.0 29.0 41.0 39 35.67917479765207 38.0 35.0 40.0 29.0 41.0 40 35.545112526139796 38.0 34.0 40.0 28.0 41.0 41 35.48378407878086 38.0 34.0 40.0 28.0 41.0 42 35.44179736754733 38.0 34.0 40.0 27.0 41.0 43 35.35401743368518 38.0 34.0 40.0 27.0 41.0 44 35.20627227220187 38.0 34.0 40.0 27.0 41.0 45 35.17670159279781 37.0 34.0 40.0 27.0 41.0 46 35.08036785468489 37.0 34.0 40.0 27.0 41.0 47 35.00871912604143 37.0 34.0 40.0 27.0 41.0 48 34.9188429849443 37.0 34.0 40.0 26.0 41.0 49 34.832768331651955 37.0 34.0 40.0 26.0 41.0 50 34.67214953492971 37.0 34.0 40.0 25.0 41.0 51 34.3038313096637 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 0.0 13 7.0 14 15.0 15 46.0 16 118.0 17 291.0 18 678.0 19 1467.0 20 2674.0 21 4147.0 22 6702.0 23 9843.0 24 14504.0 25 20520.0 26 27544.0 27 32672.0 28 37431.0 29 43771.0 30 53388.0 31 65399.0 32 81340.0 33 105116.0 34 178834.0 35 281588.0 36 145322.0 37 186886.0 38 296361.0 39 592901.0 40 102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.742591688515482 25.286013548166412 32.16814961530715 11.803245148010955 2 28.371274379826357 26.441941681596624 31.651724530054544 13.535059408522477 3 28.406348174084762 26.177472485567456 31.593679227317008 13.822500113030783 4 27.00188932665165 27.194795195072864 31.421644093239664 14.38167138503582 5 23.099153342354484 32.28433155878811 30.367101146337642 14.249413952519765 6 21.913175004989338 41.26167014283894 26.350969027738895 10.474185824432826 7 90.98713093166137 3.022420283613642 4.624214892753197 1.3662338919718002 8 92.24220647047568 1.9660962455969373 4.2692297328957025 1.5224675510316856 9 87.83076346242285 4.633531369353085 5.605870110961977 1.9298350572620793 10 46.877587434447854 34.448037580109144 10.503413986314825 8.170960999128178 11 34.56431086159598 22.905608107892107 26.53775524976606 15.992325780745857 12 35.004057690911274 22.42809301314491 26.037633998563255 16.53021529738056 13 22.992835903508706 33.10605392869881 26.423674080420373 17.47743608737211 14 15.47320622431975 36.22693658265245 28.90318125707584 19.39667593595196 15 14.706103981926036 28.947251844913545 40.339841318482385 16.006802854678035 16 19.139833463413876 26.387184547070813 37.64591817302067 16.82706381649464 17 19.43275444827506 25.89478135736497 27.404826939596806 27.267637254763162 18 21.004955543509087 27.48246424459587 32.65201270146309 18.86056751043194 19 25.367578387418373 29.510990017212645 26.173727627326322 18.94770396804266 20 27.588964359453417 28.260024688662988 26.797246524474705 17.35376442740889 21 22.727910017450125 29.31890619084437 30.573753384643982 17.379430407061523 22 22.85774699281033 24.37477993249208 29.100882370805813 23.666590703891778 23 18.84513138743801 29.79806536969743 29.360053962493875 21.996749280370686 24 19.122159559275854 27.133827076147128 36.210495741593824 17.5335176229832 25 18.297149021153423 28.94469438074887 32.77340091127928 19.984755686818417 26 17.117153323173504 35.85642396179514 26.260681408925272 20.765741306106083 27 16.91091210589363 34.74529712024968 30.25735853227132 18.08643224158537 28 14.859962852833009 30.363995654137682 35.81340376102507 18.962637732004243 29 16.311232428280256 27.355047726391525 35.26491903570814 21.068800809620083 30 18.442330781501678 31.49202002677117 31.089584772858363 18.976064418868788 31 24.679711865126645 28.594824149220727 26.6715654283821 20.05389855727053 32 25.771201035407636 28.48279808500737 27.28247968071887 18.463521198866133 33 24.36596581492454 28.77051280353332 26.788569413915987 20.074951967626156 34 18.000894199077578 29.314339290550308 29.89049943164926 22.794267078722857 35 18.511245306939088 26.892055374579442 31.761330137112047 22.835369181369423 36 25.108178450715613 27.244985429304613 28.52449388469216 19.12234223528762 37 18.524946007821274 31.711002895871477 30.39518758314613 19.368863513161124 38 19.147277510893197 32.433166839371616 27.490501989113426 20.929053660621765 39 18.33825112379999 30.90563002901352 29.74276020713633 21.01335864005016 40 22.907937227042076 27.828452610874066 27.552474826103857 21.711135335980003 41 17.924352950149085 25.902727763876644 29.355121710176284 26.817797575797986 42 19.740472190089005 26.659463142602828 27.21511790138144 26.38494676592672 43 19.844506178787753 27.105740639338638 28.365154733432313 24.684598448441296 44 18.94080794859862 29.21048797786332 29.679234624045918 22.169469449492137 45 18.136942158837705 33.92266137028017 25.651548247703193 22.288848223178938 46 20.50424059526805 32.148740289057386 27.49228308022811 19.85473603544645 47 19.013193318259518 28.530293848065618 29.42645669276955 23.030056140905312 48 19.57049216114399 26.603107592974094 32.56190775866124 21.26449248722067 49 19.512857879432918 26.071794412762845 32.38905058253096 22.026297125273274 50 18.45265197616626 30.243475155377364 30.230779172559867 21.073093695896503 51 17.349014851103068 31.83768871002878 27.387792401499954 23.425504037368206 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 742.0 1 1781.5 2 2821.0 3 7943.0 4 13065.0 5 9369.5 6 5674.0 7 5579.5 8 5485.0 9 5891.0 10 6297.0 11 6543.0 12 6789.0 13 6661.5 14 6534.0 15 6153.5 16 5773.0 17 5752.5 18 5732.0 19 5751.5 20 5771.0 21 6518.5 22 7266.0 23 8968.5 24 10671.0 25 14501.5 26 23574.5 27 28817.0 28 37391.5 29 45966.0 30 50193.5 31 54421.0 32 63875.5 33 73330.0 34 80879.5 35 88429.0 36 93178.0 37 97927.0 38 107760.5 39 117594.0 40 138467.0 41 159340.0 42 182586.0 43 205832.0 44 208827.5 45 211823.0 46 210941.5 47 210060.0 48 201589.5 49 193119.0 50 177510.5 51 161902.0 52 144636.0 53 127370.0 54 109350.5 55 91331.0 56 82017.0 57 72703.0 58 64046.0 59 55389.0 60 46976.0 61 38563.0 62 31370.5 63 24178.0 64 19677.5 65 15177.0 66 11175.5 67 7174.0 68 5682.5 69 4191.0 70 3126.5 71 2062.0 72 1512.0 73 962.0 74 700.0 75 365.5 76 293.0 77 225.0 78 157.0 79 112.0 80 67.0 81 52.0 82 37.0 83 30.0 84 23.0 85 18.0 86 13.0 87 15.0 88 17.0 89 11.5 90 6.0 91 5.0 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2189669.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.487443978918026 #Duplication Level Percentage of deduplicated Percentage of total 1 78.95924373691471 16.966323264146894 2 9.21427647500563 3.959824991258915 3 3.101047751953366 1.9990076953814293 4 1.4497714207394314 1.2460752874149972 5 0.8525038309706647 0.9159064154897583 6 0.5391151225485608 0.6950523596369838 7 0.40619365043520317 0.6109644315823048 8 0.31224358465118524 0.5367453226375113 9 0.23812720208542434 0.46050704232003437 >10 2.6200188007076646 13.468759964110586 >50 1.0669502602147958 16.727657103711735 >100 1.2356015967814007 41.14655427549545 >500 0.004053250993401799 0.6086954076373906 >1k 6.399869989581788E-4 0.26302389103270934 >5k 2.1332899965272625E-4 0.39490254814339326 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8615 0.39343846033350244 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3199 0.1460951404070661 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.13380058812542E-5 0.0 0.0 0.06978223649327821 0.0 2 9.13380058812542E-5 0.0 0.0 0.2545133533881148 0.0 3 9.13380058812542E-5 0.0 0.0 0.3773173022954611 0.0 4 9.13380058812542E-5 0.0 0.0 0.564468876346151 0.0 5 9.13380058812542E-5 0.0 0.0 1.0250407710023752 0.0 6 9.13380058812542E-5 0.0 0.0 1.3795235718275227 0.0 7 9.13380058812542E-5 0.0 0.0 1.6307487570039125 0.0 8 9.13380058812542E-5 0.0 0.0 2.1772240461914563 0.0 9 9.13380058812542E-5 0.0 0.0 2.346519040092361 0.0 10 9.13380058812542E-5 0.0 0.0 2.706071100243918 0.0 11 9.13380058812542E-5 0.0 0.0 3.2978957093515047 0.0 12 9.13380058812542E-5 0.0 0.0 3.7201969795434837 0.0 13 9.13380058812542E-5 0.0 0.0 3.8889896144120413 0.0 14 9.13380058812542E-5 0.0 0.0 3.9574017808171007 0.0 15 9.13380058812542E-5 0.0 0.0 4.069245169018696 0.0 16 9.13380058812542E-5 0.0 0.0 4.323986867421515 0.0 17 9.13380058812542E-5 0.0 0.0 4.653260378623436 0.0 18 9.13380058812542E-5 0.0 0.0 5.006829799389771 0.0 19 9.13380058812542E-5 0.0 0.0 5.2498802330397885 0.0 20 9.13380058812542E-5 0.0 0.0 5.490921230560418 0.0 21 9.13380058812542E-5 0.0 0.0 5.813938088359474 0.0 22 9.13380058812542E-5 0.0 0.0 6.175956274669825 0.0 23 9.13380058812542E-5 0.0 0.0 6.545007487433032 0.0 24 9.13380058812542E-5 0.0 0.0 6.817057737950348 0.0 25 9.13380058812542E-5 0.0 0.0 7.0553129262916 0.0 26 9.13380058812542E-5 0.0 0.0 7.269637557091962 0.0 27 9.13380058812542E-5 0.0 0.0 7.514332074847842 0.0 28 9.13380058812542E-5 0.0 0.0 7.755692755389057 0.0 29 9.13380058812542E-5 0.0 0.0 8.029387090012234 0.0 30 9.13380058812542E-5 0.0 0.0 8.365236937637606 0.0 31 9.13380058812542E-5 0.0 0.0 8.656285493378222 0.0 32 9.13380058812542E-5 0.0 0.0 8.920297999377988 0.0 33 9.13380058812542E-5 0.0 0.0 9.191937228868838 0.0 34 9.13380058812542E-5 0.0 0.0 9.475633075136013 0.0 35 9.13380058812542E-5 0.0 0.0 9.808605775576126 0.0 36 9.13380058812542E-5 0.0 0.0 10.089926833690388 0.0 37 9.13380058812542E-5 0.0 0.0 10.3849029236839 0.0 38 9.13380058812542E-5 0.0 0.0 10.715729180985802 0.0 39 9.13380058812542E-5 0.0 0.0 11.19187420564478 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGT 35 1.2126111E-7 45.000004 21 GTCGGAC 30 2.1664055E-6 45.000004 20 CGGACCG 35 1.2126111E-7 45.000004 6 CGAAACG 20 7.0346886E-4 45.0 32 CGCATCG 95 0.0 45.0 21 TAGCGCC 20 7.0346886E-4 45.0 20 CGTTCGA 25 3.891968E-5 45.0 26 CGCGTGA 20 7.0346886E-4 45.0 9 TCGAATC 25 3.891968E-5 45.0 13 CCGTTCG 20 7.0346886E-4 45.0 35 ACGACTC 20 7.0346886E-4 45.0 23 TACGTCG 20 7.0346886E-4 45.0 26 CGACGGT 570 0.0 44.210526 28 CGGTCTA 585 0.0 43.846153 31 TCACGAC 595 0.0 43.487396 25 CACGACG 595 0.0 43.10924 26 TTACGGG 650 0.0 42.576923 3 GGCGATA 415 0.0 41.746986 8 CTCACGA 620 0.0 41.73387 24 GACGGTC 615 0.0 41.707317 29 >>END_MODULE