##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548099_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1970025 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.532785624547913 31.0 31.0 33.0 30.0 34.0 2 31.94816512480806 31.0 31.0 34.0 30.0 34.0 3 32.05390083882184 33.0 31.0 34.0 30.0 34.0 4 35.75306303219502 37.0 35.0 37.0 35.0 37.0 5 35.64950495552087 37.0 35.0 37.0 33.0 37.0 6 35.712988413852614 37.0 35.0 37.0 33.0 37.0 7 36.07764520754813 37.0 35.0 37.0 35.0 37.0 8 36.113310744787505 37.0 35.0 37.0 35.0 37.0 9 37.947919442646665 39.0 38.0 39.0 35.0 39.0 10 37.3715313257446 39.0 37.0 39.0 35.0 39.0 11 37.01074554891435 39.0 37.0 39.0 33.0 39.0 12 36.445421758607125 38.0 35.0 39.0 32.0 39.0 13 36.21276024415934 39.0 35.0 39.0 32.0 39.0 14 37.17389677795967 39.0 35.0 41.0 32.0 41.0 15 37.42865496630753 39.0 35.0 41.0 32.0 41.0 16 37.543248435933556 39.0 35.0 41.0 33.0 41.0 17 37.496452583089045 39.0 35.0 41.0 33.0 41.0 18 37.43935076966029 39.0 35.0 41.0 32.0 41.0 19 37.413395261481455 39.0 35.0 41.0 32.0 41.0 20 37.29170086674027 39.0 35.0 41.0 32.0 41.0 21 37.17488407507519 39.0 35.0 41.0 32.0 41.0 22 37.11642999454322 39.0 35.0 41.0 32.0 41.0 23 37.03629953934595 39.0 35.0 41.0 32.0 41.0 24 37.06498546972754 39.0 35.0 41.0 32.0 41.0 25 37.052522176114515 39.0 35.0 41.0 32.0 41.0 26 36.92804761360897 39.0 35.0 41.0 32.0 41.0 27 36.88242788797096 39.0 35.0 41.0 31.0 41.0 28 36.872986383421534 39.0 35.0 41.0 31.0 41.0 29 36.81966929353688 39.0 35.0 41.0 31.0 41.0 30 36.74495399804571 38.0 35.0 41.0 31.0 41.0 31 36.672942729153185 38.0 35.0 41.0 31.0 41.0 32 36.599436555373664 39.0 35.0 41.0 31.0 41.0 33 36.518297483534475 39.0 35.0 41.0 30.0 41.0 34 36.44273346784939 38.0 35.0 41.0 30.0 41.0 35 36.343366200936536 38.0 35.0 41.0 30.0 41.0 36 36.20892323701476 38.0 35.0 41.0 30.0 41.0 37 36.16371315084834 38.0 35.0 41.0 30.0 41.0 38 36.039988325021255 38.0 35.0 41.0 30.0 41.0 39 35.98581591604167 38.0 35.0 40.0 29.0 41.0 40 35.8854435857413 38.0 35.0 40.0 29.0 41.0 41 35.82022918490882 38.0 35.0 40.0 29.0 41.0 42 35.79192396035583 38.0 35.0 40.0 29.0 41.0 43 35.7076732528775 38.0 35.0 40.0 28.0 41.0 44 35.55529549117397 38.0 34.0 40.0 28.0 41.0 45 35.51587416403345 38.0 34.0 40.0 28.0 41.0 46 35.45996776690651 38.0 34.0 40.0 28.0 41.0 47 35.38519460412939 38.0 34.0 40.0 27.0 41.0 48 35.27935787616909 38.0 34.0 40.0 27.0 41.0 49 35.190829050392765 37.0 34.0 40.0 27.0 41.0 50 35.029863580411416 37.0 34.0 40.0 26.0 41.0 51 34.66351543762135 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 3.0 14 14.0 15 36.0 16 124.0 17 273.0 18 593.0 19 1187.0 20 2108.0 21 3478.0 22 5415.0 23 8032.0 24 11513.0 25 16388.0 26 22031.0 27 26861.0 28 30994.0 29 36027.0 30 43709.0 31 54084.0 32 67464.0 33 88211.0 34 147556.0 35 227541.0 36 131762.0 37 176492.0 38 289237.0 39 578802.0 40 86.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.37862463674318 24.47842032461517 31.16995977208411 11.97299526655753 2 29.242319259907866 25.801550741741856 32.06223271278284 12.893897285567443 3 29.73693227243309 25.17856372381061 31.695536858669303 13.38896714508699 4 26.514739660664205 27.534980520551773 31.065798657377446 14.884481161406582 5 23.080976129744545 32.279641121305566 30.148043806550678 14.49133894239921 6 21.728404461872312 41.613177497747486 26.114186368193298 10.544231672186902 7 91.60310148348371 2.8952932069389985 4.207053209984645 1.2945520995926447 8 92.80318777680486 1.9833758454841945 3.9433509727033917 1.2700854050075507 9 87.40620042892857 5.277039631476757 5.2034872653900335 2.113272674204642 10 44.078273118361444 36.64400197967031 10.640677148767146 8.637047753201102 11 33.73764292331315 21.890229819418536 27.269450895293208 17.102676361975103 12 33.499422596159945 22.133780028172232 27.07874265555006 17.288054720117767 13 24.677757896473395 29.873631045291305 27.350465095620613 18.098145962614687 14 17.124300453039936 34.14789152421924 29.551604675067576 19.176203347673255 15 17.02120531465337 28.72775726196368 38.205098920064465 16.045938503318485 16 22.391187929087195 26.006471999086305 34.999454321645665 16.602885750180835 17 22.032563038540122 25.511199096458164 26.903465692059747 25.552772172941967 18 22.690574992703137 27.43782439309146 31.859341886524284 18.01225872768112 19 27.09351404169998 27.459296201824852 26.30865090544536 19.13853885102981 20 27.815433814291694 28.61588050913059 26.67240263448433 16.896283042093373 21 25.77652567860814 26.974530780066242 29.730333371403916 17.518610169921704 22 24.479130975495234 23.001230948845826 29.879163970000384 22.64047410565856 23 20.686488750142765 27.90375756652834 30.128247103463153 21.281506579865738 24 20.558622352508216 26.326417177446988 34.316468065126074 18.79849240491872 25 20.27004733442469 28.635321886778087 31.80487557264502 19.289755206152208 26 18.947779850509512 33.82860623596147 26.394893465818964 20.828720447710054 27 17.759470057486578 33.81789571198335 30.449765865915406 17.972868364614662 28 16.457659166761843 30.09971954670626 34.8119440108628 18.63067727566909 29 18.252154160480195 28.1034504638266 34.3748429588457 19.269552416847503 30 20.578165251710004 29.243131432342228 30.801538051547567 19.377165264400197 31 24.942881435514778 27.407317166025813 27.980761665461095 19.66903973299831 32 26.445349678303575 27.597619319551782 27.655994213271406 18.301036788873237 33 24.73506681387292 27.366962348193553 27.803911117879217 20.094059720054315 34 20.027664623545384 27.194629509777794 30.52088171469905 22.256824151977767 35 20.399690359259402 26.973921650740472 31.294069872209747 21.332318117790383 36 25.684699432748314 26.294894734838394 28.831766094338906 19.18863973807439 37 20.297153589421455 30.348853440946183 29.379576401314704 19.97441656831766 38 20.522429918402054 29.929011053159222 28.162586769203436 21.385972259235288 39 19.78441897945458 29.407900914963008 29.625461605817183 21.18221849976523 40 23.18173627238233 26.343472798568545 28.171520665981397 22.303270263067727 41 19.020570804939023 25.745815408433902 30.077841651755687 25.155772134871384 42 20.46014644484207 26.347685943071784 28.495831271176762 24.69633634090938 43 20.87080113196533 26.920267509295563 28.665270745295114 23.543660613443993 44 20.70359513204147 28.867349399119302 29.210339970304943 21.218715498534284 45 19.549295059707365 31.859849494295755 26.792857958655347 21.79799748734153 46 21.642161901498714 30.159160416745976 27.69502925089783 20.503648430857478 47 20.197662466212357 27.989746323016206 29.42693620639332 22.385655004378116 48 20.899582492607962 27.40351010773975 30.725853732820653 20.97105366683164 49 21.569472468623495 25.54541186025558 31.352140201266483 21.532975469854442 50 20.076445730384133 29.477950787426554 29.21145670740219 21.23414677478712 51 19.38285047144072 30.326366416669835 28.08142028654459 22.209362825344854 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 664.0 1 1669.0 2 2674.0 3 6698.0 4 10722.0 5 7837.5 6 4953.0 7 4644.5 8 4336.0 9 4367.5 10 4399.0 11 4362.0 12 4325.0 13 4217.0 14 4109.0 15 4259.5 16 4410.0 17 4161.5 18 3913.0 19 3919.5 20 3926.0 21 5224.0 22 6522.0 23 8012.5 24 9503.0 25 13066.0 26 21004.0 27 25379.0 28 29658.5 29 33938.0 30 41660.0 31 49382.0 32 56471.5 33 63561.0 34 69155.5 35 74750.0 36 78166.5 37 81583.0 38 90666.5 39 99750.0 40 121115.5 41 142481.0 42 155524.0 43 168567.0 44 174803.5 45 181040.0 46 179282.5 47 177525.0 48 171434.0 49 165343.0 50 156049.0 51 146755.0 52 133901.5 53 121048.0 54 108613.5 55 96179.0 56 88470.0 57 80761.0 58 71812.5 59 62864.0 60 53583.0 61 44302.0 62 37144.0 63 29986.0 64 24078.0 65 18170.0 66 14840.0 67 11510.0 68 8961.5 69 6413.0 70 5104.0 71 3795.0 72 2949.5 73 2104.0 74 1554.0 75 680.0 76 356.0 77 253.0 78 150.0 79 130.0 80 110.0 81 84.5 82 59.0 83 42.5 84 26.0 85 27.5 86 29.0 87 20.5 88 12.0 89 8.0 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1970025.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.076860624959654 #Duplication Level Percentage of deduplicated Percentage of total 1 80.22484374494084 16.106630065263435 2 7.948517229441602 3.19162545181179 3 2.5235863375294083 1.5199707352089098 4 1.1691631941166813 0.9389250598445306 5 0.7175273688979543 0.7202848489979119 6 0.48928736690617813 0.5894012562557301 7 0.3615588880569592 0.5081277182264472 8 0.28420383058761084 0.45647365566296866 9 0.24394021648200367 0.4407798354418507 >10 3.132614655654687 15.872840977794617 >50 1.6843611454075746 24.626834894254163 >100 1.2168505676731622 34.155673404040876 >500 0.0025324673608927164 0.33714652581805526 >1k 7.59740208267815E-4 0.21044329216723434 >5k 2.5324673608927167E-4 0.3248422792115149 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6389 0.32431060519536553 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5228233144249438E-4 0.0 0.0 0.04715676197002576 0.0 2 1.5228233144249438E-4 0.0 0.0 0.13649572974962246 0.0 3 1.5228233144249438E-4 0.0 0.0 0.19451529802921283 0.0 4 1.5228233144249438E-4 0.0 0.0 0.284006548140252 0.0 5 1.5228233144249438E-4 0.0 0.0 0.503496148526034 0.0 6 1.5228233144249438E-4 0.0 0.0 0.6726310579814977 0.0 7 1.5228233144249438E-4 0.0 0.0 0.7902945394093983 0.0 8 1.5228233144249438E-4 0.0 0.0 1.061001763937006 0.0 9 1.5228233144249438E-4 0.0 0.0 1.1460768264362127 0.0 10 1.5228233144249438E-4 0.0 0.0 1.3452621159629954 0.0 11 1.5228233144249438E-4 0.0 0.0 1.695663760612175 0.0 12 1.5228233144249438E-4 0.0 0.0 1.9812438928439995 0.0 13 1.5228233144249438E-4 0.0 0.0 2.094491186660068 0.0 14 1.5228233144249438E-4 0.0 0.0 2.1418509917386834 0.0 15 1.5228233144249438E-4 0.0 0.0 2.217890635905636 0.0 16 1.5228233144249438E-4 0.0 0.0 2.3906803213157195 0.0 17 1.5228233144249438E-4 0.0 0.0 2.616464258067791 0.0 18 1.5228233144249438E-4 0.0 0.0 2.8662072816334816 0.0 19 1.5228233144249438E-4 0.0 0.0 3.0247331886651185 0.0 20 1.5228233144249438E-4 0.0 0.0 3.2063552492988667 0.0 21 1.5228233144249438E-4 0.0 0.0 3.424474308701666 0.0 22 1.5228233144249438E-4 0.0 0.0 3.677009175010469 0.0 23 1.5228233144249438E-4 0.0 0.0 3.9233512265072776 0.0 24 1.5228233144249438E-4 0.0 0.0 4.108932627758531 0.0 25 1.5228233144249438E-4 0.0 0.0 4.281316226951435 0.0 26 1.5228233144249438E-4 0.0 0.0 4.447659293663786 0.0 27 1.5228233144249438E-4 0.0 0.0 4.639027423509854 0.0 28 1.5228233144249438E-4 0.0 0.0 4.827248385172777 0.0 29 1.5228233144249438E-4 0.0 0.0 5.038667021992107 0.0 30 1.5228233144249438E-4 0.0 0.0 5.325922259869799 0.0 31 1.5228233144249438E-4 0.0 0.0 5.5637365008058275 0.0 32 1.5228233144249438E-4 0.0 0.0 5.762617225669725 0.0 33 1.5228233144249438E-4 0.0 0.0 5.981396175175442 0.0 34 1.5228233144249438E-4 0.0 0.0 6.217484549688455 0.0 35 1.5228233144249438E-4 0.0 0.0 6.481136026192561 0.0 36 1.5228233144249438E-4 0.0 0.0 6.704838771081585 0.0 37 1.5228233144249438E-4 0.0 0.0 6.947627568178069 0.0 38 1.5228233144249438E-4 0.0 0.0 7.227319450260784 0.0 39 1.5228233144249438E-4 0.0 0.0 7.691882082714686 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGCC 25 3.891823E-5 45.000004 30 TACCGCG 30 2.1662945E-6 45.000004 1 TCCGATC 20 7.034516E-4 45.0 17 CGCGTAG 45 3.8562575E-10 45.0 24 CGAAGTA 20 7.034516E-4 45.0 36 CGACGGT 425 0.0 43.411762 28 CGCGAGG 270 0.0 43.333332 2 CGGTCTA 435 0.0 42.931034 31 ACGGTCT 445 0.0 41.460674 30 GGCGATA 430 0.0 40.813953 8 TACGGGA 785 0.0 40.700638 4 GGGCGAT 1715 0.0 40.408165 7 CACGACG 460 0.0 40.1087 26 TCACGAC 455 0.0 40.054943 25 AGTCCGC 45 1.929584E-8 40.0 13 ACGGGTA 180 0.0 40.0 5 GCGCGAG 175 0.0 39.857143 1 CGTTTTT 3155 0.0 39.793976 1 CGGGTAT 170 0.0 39.705883 6 TCTCACG 455 0.0 39.56044 23 >>END_MODULE