##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548095_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1763204 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.493416530361774 31.0 31.0 33.0 30.0 34.0 2 31.88419717741112 31.0 31.0 34.0 30.0 34.0 3 31.856936576822648 33.0 31.0 34.0 30.0 34.0 4 35.6314062354668 37.0 35.0 37.0 33.0 37.0 5 35.57052558864431 37.0 35.0 37.0 33.0 37.0 6 35.64437126957516 37.0 35.0 37.0 33.0 37.0 7 36.07114037853816 37.0 35.0 37.0 35.0 37.0 8 36.119172824018094 37.0 35.0 37.0 35.0 37.0 9 37.9453381457846 39.0 38.0 39.0 35.0 39.0 10 37.33550570438815 39.0 37.0 39.0 34.0 39.0 11 36.98074584676532 39.0 37.0 39.0 33.0 39.0 12 36.535987894764304 39.0 35.0 39.0 32.0 39.0 13 36.35407984555389 39.0 35.0 39.0 32.0 39.0 14 37.40567852613764 40.0 35.0 41.0 32.0 41.0 15 37.60707722986109 40.0 35.0 41.0 32.0 41.0 16 37.708270852380096 40.0 35.0 41.0 33.0 41.0 17 37.65013690985275 40.0 35.0 41.0 33.0 41.0 18 37.52365806792634 39.0 36.0 41.0 32.0 41.0 19 37.45772185181068 39.0 36.0 41.0 32.0 41.0 20 37.29065666820175 39.0 35.0 41.0 32.0 41.0 21 37.17139707033333 39.0 35.0 41.0 32.0 41.0 22 37.1042760792285 39.0 35.0 41.0 32.0 41.0 23 37.02905165823127 39.0 35.0 41.0 32.0 41.0 24 37.022822656935894 39.0 35.0 41.0 32.0 41.0 25 37.01617566657063 39.0 35.0 41.0 32.0 41.0 26 36.89770100340063 39.0 35.0 41.0 32.0 41.0 27 36.832090898160395 39.0 35.0 41.0 31.0 41.0 28 36.777490296074646 38.0 35.0 41.0 31.0 41.0 29 36.72961608526296 38.0 35.0 41.0 31.0 41.0 30 36.62928169400705 38.0 35.0 41.0 31.0 41.0 31 36.51518088661324 38.0 35.0 41.0 30.0 41.0 32 36.36109037865159 38.0 35.0 41.0 30.0 41.0 33 36.20396335307769 38.0 35.0 41.0 30.0 41.0 34 36.04316913981592 38.0 35.0 41.0 30.0 41.0 35 35.88809973207865 38.0 35.0 41.0 29.0 41.0 36 35.728861776629365 38.0 35.0 41.0 28.0 41.0 37 35.64510345938417 38.0 35.0 40.0 27.0 41.0 38 35.533964305888595 38.0 35.0 40.0 27.0 41.0 39 35.494684109155834 38.0 35.0 40.0 27.0 41.0 40 35.39009609778562 38.0 35.0 40.0 26.0 41.0 41 35.313733975195156 38.0 34.0 40.0 26.0 41.0 42 35.28181707845491 38.0 34.0 40.0 26.0 41.0 43 35.1928767176118 38.0 34.0 40.0 26.0 41.0 44 35.03185337601321 38.0 34.0 40.0 25.0 41.0 45 35.00870971254602 38.0 34.0 40.0 25.0 41.0 46 34.92593369797255 38.0 34.0 40.0 24.0 41.0 47 34.85015290346438 38.0 34.0 40.0 24.0 41.0 48 34.724941073182684 37.0 34.0 40.0 24.0 41.0 49 34.62257458581083 37.0 34.0 40.0 24.0 41.0 50 34.46572546341773 37.0 34.0 40.0 24.0 41.0 51 34.12492485271132 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 7.0 14 18.0 15 28.0 16 100.0 17 281.0 18 566.0 19 1319.0 20 2195.0 21 3674.0 22 5666.0 23 8704.0 24 13101.0 25 19991.0 26 26668.0 27 30439.0 28 31597.0 29 35317.0 30 40654.0 31 49103.0 32 60293.0 33 77397.0 34 123953.0 35 188425.0 36 123849.0 37 161465.0 38 254519.0 39 503793.0 40 76.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.714369976474643 25.033405096630908 29.311866352390307 14.940358574504142 2 30.399375228277613 25.838076592385228 30.923761515967524 12.838786663369639 3 27.576275915889482 25.286693995703274 34.325977028182784 12.811053060224456 4 24.92025880159074 27.25912600016788 33.777827182787696 14.042788015453686 5 22.641622863831977 31.30165312692122 32.27936188892493 13.777362120321868 6 21.51265537056404 40.1542873087856 28.400060344690687 9.932996975959673 7 88.87496852321115 2.487914047381925 7.361768689272484 1.275348740134437 8 89.82539740154854 1.8107944401215061 7.121070505738417 1.2427376525915321 9 84.95171290446257 4.9915381317193015 8.143130346800485 1.9136186170176563 10 38.14567117588209 40.11396299010211 13.336063212197793 8.40430262181801 11 28.96698283352352 22.25766275484856 32.19020601132937 16.585148400298547 12 30.381453308862728 22.49541176177005 30.00486614141075 17.11826878795647 13 22.794072608728204 28.864782520910797 31.122717507446673 17.218427362914333 14 16.431847931379465 32.78253679097824 31.93011132007414 18.855503957568153 15 15.478016156950641 29.47225618816654 39.08980469645032 15.95992295843249 16 20.304570543170275 27.000108892674923 37.0186319903993 15.676688573755504 17 20.638848369218763 26.922182572181097 29.465904115462532 22.973064943137604 18 20.712180779989158 28.836481768417038 32.851161862155486 17.60017558943832 19 23.728224300761568 29.37504678982126 28.673823335246517 18.22290557417066 20 25.070269804288102 29.356160716513802 29.50617171921116 16.06739775998693 21 23.517188028157832 27.816690524749266 32.179827178250505 16.486294268842403 22 22.575493249788455 24.413794433315715 31.870674068343764 21.140038248552067 23 18.817448236278956 28.083080573773657 32.728487458059305 20.370983731888085 24 18.550094033361994 27.350947479701727 36.44371269575159 17.655245791184683 25 18.83270455375555 30.050975383449675 32.790647026662825 18.325673036131953 26 18.23271725790096 34.103144049128744 28.79167696987983 18.872461723090463 27 17.861121004716413 32.466407744084066 32.42336110852743 17.249110142672087 28 16.141807754519615 30.344531886270676 35.76988255471289 17.743777804496812 29 17.337755585853934 28.01955984673356 34.810662861472636 19.832021705939866 30 19.34007636098829 29.64427258558851 32.4800193284498 18.5356317249734 31 23.195727777387077 28.63037969514588 29.495112306914006 18.678780220553037 32 23.467902749766903 29.691402696454862 29.214770383914733 17.6259241698635 33 23.00488202159251 29.589145668907285 28.700876359173417 18.705095950326793 34 18.95764755524602 29.564361242374677 30.77806084831931 20.699930354059994 35 19.015156499191246 29.59271870980329 30.68085144997402 20.71127334103144 36 23.080596459626907 29.021656030725886 29.44940006941908 18.44834744022813 37 19.250466763913877 31.609048073847383 30.720551904374084 18.41993325786466 38 18.991960090834638 32.17336167567678 29.06198034940937 19.77269788407921 39 18.794251827922352 31.673022520366334 29.350772797702362 20.18195285400895 40 21.512712085498897 29.069636865615095 29.019954582680167 20.39769646620584 41 18.34512625878798 28.188570352608096 30.11302152218348 23.353281866420446 42 19.761581756847193 29.189362093098698 28.63917051004875 22.409885640005353 43 20.542943414375195 29.196394745021 28.6312871341036 21.62937470650021 44 19.778142517825504 30.88780424726804 29.35905317819152 19.975000056714933 45 18.754211083913148 32.60949952472885 27.068563819047597 21.567725572310408 46 20.67344447948167 31.677276140480625 27.892121388109377 19.75715799192833 47 19.954525965231475 29.581602582571275 29.24658746236964 21.21728398982761 48 20.194373424742686 28.806990002291283 31.086136374463756 19.912500198502272 49 20.1568281378672 28.6827275800191 30.31906688051978 20.841377401593917 50 18.434395566253254 31.02624540325453 30.205807155609897 20.333551874882318 51 17.835655998965517 31.61540014655139 28.958305448490364 21.590638405992728 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 907.0 1 1609.5 2 2312.0 3 15780.0 4 29248.0 5 19945.0 6 10642.0 7 9871.5 8 9101.0 9 9746.0 10 10391.0 11 10680.0 12 10969.0 13 11045.0 14 11121.0 15 10903.5 16 10686.0 17 10259.5 18 9833.0 19 10108.5 20 10384.0 21 10941.5 22 11499.0 23 12311.0 24 13123.0 25 14770.5 26 21884.0 27 27350.0 28 33103.0 29 38856.0 30 42090.0 31 45324.0 32 52679.0 33 60034.0 34 66195.0 35 72356.0 36 76457.5 37 80559.0 38 86435.5 39 92312.0 40 108483.5 41 124655.0 42 135356.5 43 146058.0 44 146019.0 45 145980.0 46 151498.0 47 157016.0 48 150090.0 49 143164.0 50 132262.5 51 121361.0 52 108513.5 53 95666.0 54 84432.0 55 73198.0 56 66344.5 57 59491.0 58 51753.0 59 44015.0 60 38262.5 61 32510.0 62 26806.0 63 21102.0 64 16403.5 65 11705.0 66 8976.5 67 6248.0 68 4799.0 69 3350.0 70 2534.5 71 1719.0 72 1475.0 73 1231.0 74 909.0 75 505.5 76 424.0 77 289.5 78 155.0 79 105.5 80 56.0 81 46.5 82 37.0 83 26.5 84 16.0 85 15.5 86 15.0 87 12.5 88 10.0 89 7.0 90 4.0 91 4.0 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1763204.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.854772552744052 #Duplication Level Percentage of deduplicated Percentage of total 1 78.37785983195256 19.480638792940354 2 7.717453650029739 3.8363111031566715 3 2.773322738629853 2.0679091765199473 4 1.4324337562524732 1.4241126083411215 5 0.9292696652278104 1.1548393084700919 6 0.6492813506022991 0.9682644175175168 7 0.5237611734036738 0.9112575385834654 8 0.440015212121027 0.8749182413612444 9 0.3649585593134946 0.816386578462265 >10 4.891170148759661 29.532145382740005 >50 1.6013410879670227 27.79121941132434 >100 0.2959212771881434 9.296562676901294 >500 0.0018351706012552584 0.27111077026929736 >1k 0.0011469816257845364 0.38736626145312436 >5k 0.0 0.0 >10k+ 2.293963251569073E-4 1.1869577319592497 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20818 1.1806915138577272 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1342986971445165E-4 0.0 0.0 0.036070698569195626 0.0 2 1.1342986971445165E-4 0.0 0.0 0.12800560797275867 0.0 3 1.1342986971445165E-4 0.0 0.0 0.22084795633403737 0.0 4 1.1342986971445165E-4 0.0 0.0 0.33354053189534505 0.0 5 1.1342986971445165E-4 0.0 0.0 0.6844358338570012 0.0 6 1.1342986971445165E-4 0.0 0.0 1.0911386317181677 0.0 7 1.1342986971445165E-4 0.0 0.0 1.37301185795858 0.0 8 1.1342986971445165E-4 0.0 0.0 1.8313252465398218 0.0 9 1.1342986971445165E-4 0.0 0.0 2.02926036919154 0.0 10 1.1342986971445165E-4 0.0 0.0 2.2955369883462153 0.0 11 1.1342986971445165E-4 0.0 0.0 2.691804238193652 0.0 12 1.1342986971445165E-4 0.0 0.0 2.986892044255798 0.0 13 1.1342986971445165E-4 0.0 0.0 3.119037842473134 0.0 14 1.1342986971445165E-4 0.0 0.0 3.1852808863863737 0.0 15 1.1342986971445165E-4 0.0 0.0 3.2678578315384947 0.0 16 1.1342986971445165E-4 0.0 0.0 3.426659649138727 0.0 17 1.1342986971445165E-4 0.0 0.0 3.650967216499055 0.0 18 1.1342986971445165E-4 0.0 0.0 3.890587816270834 0.0 19 1.1342986971445165E-4 0.0 0.0 4.059825181884796 0.0 20 1.1342986971445165E-4 0.0 0.0 4.238930946163915 0.0 21 1.1342986971445165E-4 0.0 0.0 4.4707248849253975 0.0 22 1.1342986971445165E-4 0.0 0.0 4.739440246278933 0.0 23 1.1342986971445165E-4 0.0 0.0 5.011218214114759 0.0 24 1.1342986971445165E-4 0.0 0.0 5.207395173785903 0.0 25 1.1342986971445165E-4 0.0 0.0 5.36937302773814 0.0 26 1.7014480457167746E-4 0.0 0.0 5.533109044670951 0.0 27 1.7014480457167746E-4 0.0 0.0 5.702289695350056 0.0 28 1.7014480457167746E-4 0.0 0.0 5.885195360264609 0.0 29 1.7014480457167746E-4 0.0 0.0 6.0983300854580635 0.0 30 1.7014480457167746E-4 0.0 0.0 6.355192025426439 0.0 31 1.7014480457167746E-4 0.0 0.0 6.5779115746107655 0.0 32 1.7014480457167746E-4 0.0 0.0 6.773861674542481 0.0 33 1.7014480457167746E-4 0.0 0.0 6.970719213431911 0.0 34 1.7014480457167746E-4 0.0 0.0 7.1804510425339325 0.0 35 1.7014480457167746E-4 0.0 0.0 7.42908931694801 0.0 36 1.7014480457167746E-4 0.0 0.0 7.656289345986057 0.0 37 1.7014480457167746E-4 0.0 0.0 7.888650434096111 0.0 38 1.7014480457167746E-4 0.0 0.0 8.144491505237058 0.0 39 1.7014480457167746E-4 0.0 0.0 8.51506688959417 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCCGTA 20 7.0343143E-4 45.0 29 CGACGGT 455 0.0 44.010986 28 CGGTCTA 455 0.0 44.010986 31 CGTTTTT 7945 0.0 43.92385 1 GCTAGCG 100 0.0 42.75 1 TCACGAC 465 0.0 42.580647 25 CGGGTCA 70 0.0 41.785713 6 CTCACGA 475 0.0 41.684208 24 ACGGTCT 475 0.0 41.684208 30 GCGCGAC 65 0.0 41.53846 9 TCGTCCC 345 0.0 41.086956 38 CGTGCGG 110 0.0 40.909092 2 CGGGACG 55 6.184564E-11 40.909092 6 CTCGTCC 355 0.0 40.56338 37 TATTACG 50 1.0822987E-9 40.5 1 TCGTAAG 100 0.0 40.5 1 TACGGGA 695 0.0 40.467625 4 ACGGGAC 695 0.0 40.467625 5 CTACGGG 375 0.0 40.199997 3 CACGACG 500 0.0 40.050003 26 >>END_MODULE