SRR1548092_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548092_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1332583
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5530	0.4149835319826233	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2032	0.15248581139035994	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1393	0.10453382641081269	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACC	35	1.21212E-7	45.000004	27
TACGAAC	35	1.21212E-7	45.000004	41
AGCGCGC	35	1.21212E-7	45.000004	36
CCGCGTG	35	1.21212E-7	45.000004	33
CTTCGGT	40	6.8157533E-9	45.0	34
AACCGAT	20	7.033692E-4	45.0	26
CGCGACT	25	3.8911414E-5	45.0	43
AATATCG	25	3.8911414E-5	45.0	1
TAGCACG	20	7.033692E-4	45.0	1
TCGCTAG	25	3.8911414E-5	45.0	1
TTGCGAG	90	0.0	45.0	1
CCGGTCA	25	3.8911414E-5	45.0	31
GCGGACA	20	7.033692E-4	45.0	14
CGCGTCC	20	7.033692E-4	45.0	17
TATCGCG	25	3.8911414E-5	45.0	1
ATACCGG	40	6.8157533E-9	45.0	2
ATCGCAA	25	3.8911414E-5	45.0	25
AATCCGG	60	0.0	44.999996	2
CGTGCGA	30	2.1657634E-6	44.999996	39
CTATCCG	30	2.1657634E-6	44.999996	1