SRR1548091_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548091_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	968280
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3545	0.3661131077787417	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1690	0.1745362911554509	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTACG	45	3.8380676E-10	45.000004	1
AGCGCAT	45	3.8380676E-10	45.000004	10
CGCGTGA	45	3.8380676E-10	45.000004	12
CGATAGT	45	3.8380676E-10	45.000004	10
ACGGTCC	45	3.8380676E-10	45.000004	33
ACGCGTG	45	3.8380676E-10	45.000004	11
CTAGATA	100	0.0	45.0	19
TTTAGCG	20	7.032737E-4	45.0	1
TTAGGTA	25	3.8903483E-5	45.0	18
CTATGCG	40	6.8139343E-9	45.0	1
AGCGTAT	40	6.8139343E-9	45.0	29
AACCGAT	20	7.032737E-4	45.0	35
TCGCATA	25	3.8903483E-5	45.0	14
AGTCCGT	20	7.032737E-4	45.0	33
TCGCACA	20	7.032737E-4	45.0	17
GCGACGC	20	7.032737E-4	45.0	42
TCCGCAA	40	6.8139343E-9	45.0	32
CTCGTCG	20	7.032737E-4	45.0	44
GTACAGT	20	7.032737E-4	45.0	16
AGTCAAT	35	1.2116652E-7	45.0	30