SRR1548090_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548090_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	455865
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3248	0.7124916367784322	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	582	0.12766937580204668	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTC	25	3.8870887E-5	45.000004	13
CGAACGG	25	3.8870887E-5	45.000004	2
TCTAGCG	25	3.8870887E-5	45.000004	1
CGTTCAC	25	3.8870887E-5	45.000004	21
ACGGGCT	50	2.1827873E-11	45.000004	5
TACGCGG	25	3.8870887E-5	45.000004	2
GTTCGAT	35	1.2097735E-7	45.000004	39
CTCGAAG	25	3.8870887E-5	45.000004	1
TATCGGA	25	3.8870887E-5	45.000004	10
ACTGCAC	45	3.8380676E-10	45.0	33
GGTAATC	20	7.028803E-4	45.0	9
CGTATGG	20	7.028803E-4	45.0	2
TTTCGTA	20	7.028803E-4	45.0	27
CACGACG	105	0.0	45.0	26
TAGCCGG	20	7.028803E-4	45.0	2
CTAACGG	40	6.7993824E-9	45.0	2
CGTAGTA	20	7.028803E-4	45.0	30
TACGATG	40	6.7993824E-9	45.0	1
CTACGGT	20	7.028803E-4	45.0	15
TTAAGCG	20	7.028803E-4	45.0	1