##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548090_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 455865 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00886666008577 31.0 31.0 33.0 31.0 34.0 2 32.47843111447468 33.0 31.0 34.0 31.0 34.0 3 32.53287705790091 34.0 31.0 34.0 31.0 34.0 4 36.1991466771961 37.0 35.0 37.0 35.0 37.0 5 36.17166485692036 37.0 35.0 37.0 35.0 37.0 6 36.24335274697553 37.0 36.0 37.0 35.0 37.0 7 36.37050223202044 37.0 36.0 37.0 35.0 37.0 8 36.389534182268875 37.0 37.0 37.0 35.0 37.0 9 38.27423908393932 39.0 39.0 39.0 37.0 39.0 10 37.96444780801334 39.0 38.0 39.0 35.0 39.0 11 37.68626238030996 39.0 37.0 39.0 35.0 39.0 12 37.09499961611442 39.0 35.0 39.0 35.0 39.0 13 36.86615774406897 39.0 35.0 39.0 33.0 39.0 14 37.942689173329825 40.0 35.0 41.0 33.0 41.0 15 38.14044289427791 40.0 35.0 41.0 33.0 41.0 16 38.2714356223882 40.0 35.0 41.0 34.0 41.0 17 38.24180184923168 40.0 35.0 41.0 34.0 41.0 18 38.14044289427791 40.0 36.0 41.0 34.0 41.0 19 38.08105908547487 40.0 36.0 41.0 34.0 41.0 20 37.92052032948351 40.0 35.0 41.0 34.0 41.0 21 37.82470248867538 40.0 35.0 41.0 34.0 41.0 22 37.77114277253134 40.0 35.0 41.0 34.0 41.0 23 37.695600671251356 39.0 35.0 41.0 34.0 41.0 24 37.70518903622783 39.0 35.0 41.0 34.0 41.0 25 37.6954295679642 39.0 35.0 41.0 34.0 41.0 26 37.6065808956599 39.0 35.0 41.0 34.0 41.0 27 37.5741853399581 39.0 35.0 41.0 34.0 41.0 28 37.55439219944501 39.0 35.0 41.0 34.0 41.0 29 37.50430280894563 39.0 35.0 41.0 34.0 41.0 30 37.42208548583462 39.0 35.0 41.0 34.0 41.0 31 37.30609500619701 39.0 35.0 41.0 33.0 41.0 32 37.18485735908657 39.0 35.0 41.0 33.0 41.0 33 37.07671788797122 39.0 35.0 41.0 33.0 41.0 34 36.95314841016529 39.0 35.0 41.0 33.0 41.0 35 36.82486920469876 39.0 35.0 41.0 32.0 41.0 36 36.68363879657355 39.0 35.0 41.0 32.0 41.0 37 36.60986476259419 39.0 35.0 41.0 32.0 41.0 38 36.48831781338774 39.0 35.0 41.0 31.0 41.0 39 36.41706206881423 39.0 35.0 41.0 31.0 41.0 40 36.312449957772586 39.0 35.0 41.0 31.0 41.0 41 36.222517631316286 39.0 35.0 41.0 31.0 41.0 42 36.188108321542565 38.0 35.0 41.0 31.0 41.0 43 36.11281190703388 38.0 35.0 41.0 31.0 41.0 44 35.96862887038926 38.0 35.0 41.0 30.0 41.0 45 35.92030974082239 38.0 35.0 40.0 30.0 41.0 46 35.8769679620063 38.0 35.0 40.0 30.0 41.0 47 35.79398286773497 38.0 35.0 40.0 30.0 41.0 48 35.69598016956775 38.0 35.0 40.0 30.0 41.0 49 35.624733199521785 38.0 35.0 40.0 29.0 41.0 50 35.501598060829416 37.0 35.0 40.0 29.0 41.0 51 35.092297061630084 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 5.0 13 3.0 14 8.0 15 14.0 16 26.0 17 31.0 18 88.0 19 141.0 20 285.0 21 504.0 22 771.0 23 1255.0 24 2018.0 25 3055.0 26 4387.0 27 5092.0 28 5109.0 29 5301.0 30 5974.0 31 7501.0 32 10266.0 33 15279.0 34 33601.0 35 62272.0 36 26998.0 37 38964.0 38 70880.0 39 156007.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.51488927643052 23.401664966601953 30.37522073420859 13.70822502275893 2 31.285139240784005 25.329209305386463 30.061970100797385 13.323681353032146 3 29.658561196845557 25.29937591172825 31.71882026477137 13.323242626654821 4 27.19577067772257 27.153214219121892 30.826012086911696 14.825003016243842 5 23.616640891492 30.949732925317804 30.959165542430323 14.474460640759872 6 22.323714257510446 40.486108826077896 26.713610389040614 10.476566527371043 7 88.11490243822185 3.8030996018558123 6.484375856887456 1.5976221030348896 8 88.9612056200849 2.99979160497077 6.400798482006735 1.638204292937602 9 83.86583747381351 5.672512695644544 7.523279918396894 2.938369912145043 10 45.958781656850164 30.06021519528808 13.74047141149244 10.24053173636932 11 37.18359602075176 22.587388810283745 24.907812619964243 15.321202549000251 12 34.16954580851787 22.55601987430489 27.035635549998354 16.23879876717888 13 23.269827690215305 32.904917025873885 27.214635911947617 16.61061937196319 14 16.81396904785408 35.35981047020499 30.192052471674728 17.634168010266198 15 15.892424292279514 26.57277922191877 41.48333388174131 16.05146260406041 16 20.432145481666723 23.51990172529148 38.62810261809966 17.41985017494214 17 20.824147499808056 23.202263828107007 28.462812455441856 27.510776216643084 18 23.000230331348096 26.180119114211443 32.71933576826473 18.10031478617573 19 27.31422679960076 27.204106478891777 26.103561361367948 19.378105360139514 20 28.554944994680444 26.965878056003422 26.9325348513266 17.546642097989537 21 24.210018316826254 27.7755475853597 30.077764250381144 17.936669847432903 22 24.230199730183276 22.757614644686473 29.86300768867976 23.149177936450485 23 20.26038410494335 28.267359854342843 29.775701139591764 21.69655490112204 24 20.147412062781743 25.707830169019335 35.34884231077183 18.79591545742709 25 20.64799885931142 27.002950434887524 32.705296524190274 19.643754181610785 26 18.19705395237625 33.9631250479857 27.25806982330295 20.5817511763351 27 18.235661873580995 31.58522808287541 32.03360644050322 18.145503603040375 28 16.40836651201562 28.323736193829312 36.83327300845645 18.434624285698618 29 17.573843133383786 27.663891722330074 35.57763811654766 19.184627027738475 30 20.18558125760916 29.661851644675508 31.90198852730523 18.2505785704101 31 26.83952485933336 27.334408212957783 27.054281421034737 18.771785506674124 32 27.013260504754697 27.96463865398747 27.643271582595723 17.378829258662105 33 25.7170434229432 28.19957662904588 25.86028758514034 20.223092362870588 34 18.99685213824268 28.625360578241366 29.919822754543564 22.457964528972393 35 20.281881697432354 26.903578910423043 31.22942099086352 21.585118401281083 36 26.59976089412436 26.611167779934846 28.81774209469909 17.971329231241707 37 19.894266943064284 31.394601471926997 29.613153016792253 19.09797856821647 38 20.631107893784346 31.91427286587038 26.20227479626644 21.252344444078837 39 19.945378566022836 30.426990446733132 28.748423327081486 20.87920766016255 40 23.71667050552247 26.562030425674266 27.8975135182565 21.823785550546763 41 19.082184418632707 25.072773737839054 29.618417733320175 26.226624110208064 42 21.254538075965474 26.37118445153719 27.65577528434953 24.718502188147806 43 21.484650060873285 27.36665460169129 27.548067958715848 23.600627378719576 44 20.089719544163295 29.082294100227042 29.948559332258455 20.87942702335121 45 19.46804426749147 33.40572318559222 25.59792921149902 21.528303335417284 46 22.535619097759206 30.170116152808397 26.70330031917344 20.59096443025896 47 20.015136060017767 28.84823357792329 28.868195628091648 22.268434733967293 48 21.328902196922332 27.023131848244546 31.368716615664727 20.279249339168395 49 20.84213528127845 26.337183157294376 31.009180349445558 21.811501211981618 50 19.717460213001655 30.778190911783092 28.797999407719388 20.706349467495862 51 18.51162076491944 32.175973149945705 27.485330086758143 21.827075998376714 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 284.0 1 581.5 2 879.0 3 2960.5 4 5042.0 5 3535.0 6 2028.0 7 1898.0 8 1768.0 9 1853.5 10 1939.0 11 1936.5 12 1934.0 13 1877.0 14 1820.0 15 1823.5 16 1827.0 17 1875.5 18 1924.0 19 1735.0 20 1546.0 21 1691.5 22 1837.0 23 2277.0 24 2717.0 25 3085.5 26 4209.0 27 4964.0 28 5757.0 29 6550.0 30 8471.0 31 10392.0 32 11437.5 33 12483.0 34 13334.5 35 14186.0 36 15804.0 37 17422.0 38 19638.5 39 21855.0 40 27369.0 41 32883.0 42 35992.5 43 39102.0 44 40704.0 45 42306.0 46 39652.5 47 36999.0 48 36990.5 49 36982.0 50 34790.0 51 32598.0 52 29170.5 53 25743.0 54 24082.5 55 22422.0 56 20305.5 57 18189.0 58 16632.5 59 15076.0 60 13509.0 61 11942.0 62 10336.5 63 8731.0 64 7347.0 65 5963.0 66 4940.0 67 3917.0 68 3209.0 69 2501.0 70 2116.5 71 1732.0 72 1329.5 73 927.0 74 719.0 75 358.0 76 205.0 77 168.5 78 132.0 79 98.0 80 64.0 81 46.0 82 28.0 83 30.5 84 33.0 85 22.5 86 12.0 87 9.0 88 6.0 89 5.5 90 5.0 91 3.5 92 2.0 93 1.0 94 0.0 95 1.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 455865.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.170305277444662 #Duplication Level Percentage of deduplicated Percentage of total 1 75.38009466508706 16.711997105676577 2 6.5220752810128175 2.891928000450597 3 2.4449120482968043 1.6261333946172807 4 1.4327293244703894 1.270561860138224 5 1.035795683502294 1.1481953254152653 6 0.8268365265343871 1.0998730924685602 7 0.6898635903308377 1.0706140478200086 8 0.6098794051232923 1.0816970075207788 9 0.5248962092889176 1.0473398279017907 >10 9.042212031979 49.341564662387846 >50 1.4247182823496127 19.698411814938204 >100 0.06398734741780716 2.162729037205204 >500 9.99802303403237E-4 0.1290056676902151 >1k 9.99802303403237E-4 0.7199491557694478 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3248 0.7124916367784322 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 582 0.12766937580204668 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0315882991675167 0.0 2 0.0 0.0 0.0 0.12174656970813728 0.0 3 0.0 0.0 0.0 0.1849231680431707 0.0 4 0.0 0.0 0.0 0.2803461551117107 0.0 5 0.0 0.0 0.0 0.49181226898314195 0.0 6 0.0 0.0 0.0 0.6433922323494894 0.0 7 0.0 0.0 0.0 0.7460542046439187 0.0 8 0.0 0.0 0.0 0.9719982889671285 0.0 9 0.0 0.0 0.0 1.0492141313766137 0.0 10 0.0 0.0 0.0 1.215491428383403 0.0 11 0.0 0.0 0.0 1.482017702609325 0.0 12 0.0 0.0 0.0 1.6783477564629878 0.0 13 0.0 0.0 0.0 1.764557489607669 0.0 14 0.0 0.0 0.0 1.804042863567065 0.0 15 0.0 0.0 0.0 1.8698518201660579 0.0 16 0.0 0.0 0.0 2.0030052756846874 0.0 17 0.0 0.0 0.0 2.149759248900442 0.0 18 0.0 0.0 0.0 2.3261272525857435 0.0 19 0.0 0.0 0.0 2.4292279512574995 0.0 20 0.0 0.0 0.0 2.5555811479275663 0.0 21 0.0 0.0 0.0 2.711767738255843 0.0 22 0.0 0.0 0.0 2.87124477641407 0.0 23 0.0 0.0 0.0 3.054413038947934 0.0 24 0.0 0.0 0.0 3.1917343950511663 0.0 25 0.0 0.0 0.0 3.3042677108354446 0.0 26 0.0 0.0 0.0 3.4216270167703158 0.0 27 0.0 0.0 0.0 3.5486383030063724 0.0 28 0.0 0.0 0.0 3.681791758525002 0.0 29 0.0 0.0 0.0 3.8316168163820428 0.0 30 0.0 0.0 0.0 3.9989909293321486 0.0 31 0.0 0.0 0.0 4.161539052131662 0.0 32 0.0 0.0 0.0 4.301492766498854 0.0 33 0.0 0.0 0.0 4.451975913921885 0.0 34 0.0 0.0 0.0 4.612111041646101 0.0 35 0.0 0.0 0.0 4.7990084783872415 0.0 36 0.0 0.0 0.0 4.966163228148685 0.0 37 0.0 0.0 0.0 5.13814396806072 0.0 38 0.0 0.0 0.0 5.338641922498986 0.0 39 0.0 0.0 0.0 5.634343500817128 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTC 25 3.8870887E-5 45.000004 13 CGAACGG 25 3.8870887E-5 45.000004 2 TCTAGCG 25 3.8870887E-5 45.000004 1 CGTTCAC 25 3.8870887E-5 45.000004 21 ACGGGCT 50 2.1827873E-11 45.000004 5 TACGCGG 25 3.8870887E-5 45.000004 2 GTTCGAT 35 1.2097735E-7 45.000004 39 CTCGAAG 25 3.8870887E-5 45.000004 1 TATCGGA 25 3.8870887E-5 45.000004 10 ACTGCAC 45 3.8380676E-10 45.0 33 GGTAATC 20 7.028803E-4 45.0 9 CGTATGG 20 7.028803E-4 45.0 2 TTTCGTA 20 7.028803E-4 45.0 27 CACGACG 105 0.0 45.0 26 TAGCCGG 20 7.028803E-4 45.0 2 CTAACGG 40 6.7993824E-9 45.0 2 CGTAGTA 20 7.028803E-4 45.0 30 TACGATG 40 6.7993824E-9 45.0 1 CTACGGT 20 7.028803E-4 45.0 15 TTAAGCG 20 7.028803E-4 45.0 1 >>END_MODULE