##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548088_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1179897 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.455278723481797 31.0 31.0 33.0 30.0 34.0 2 31.860709027991426 31.0 31.0 34.0 30.0 34.0 3 31.972658630371974 33.0 31.0 34.0 30.0 34.0 4 35.698065170095354 37.0 35.0 37.0 33.0 37.0 5 35.5853146503466 37.0 35.0 37.0 33.0 37.0 6 35.63577244454389 37.0 35.0 37.0 33.0 37.0 7 35.98592165248323 37.0 35.0 37.0 35.0 37.0 8 35.98720566286718 37.0 35.0 37.0 35.0 37.0 9 37.75522778683224 39.0 37.0 39.0 35.0 39.0 10 37.22869199599626 39.0 37.0 39.0 34.0 39.0 11 36.92913957743769 39.0 37.0 39.0 33.0 39.0 12 36.427450870711596 39.0 35.0 39.0 32.0 39.0 13 36.22226770641844 39.0 35.0 39.0 32.0 39.0 14 37.303100185863684 39.0 35.0 41.0 32.0 41.0 15 37.46473293855311 39.0 35.0 41.0 32.0 41.0 16 37.57066337146378 39.0 35.0 41.0 33.0 41.0 17 37.48051228200428 39.0 35.0 41.0 32.0 41.0 18 37.41037310883916 39.0 36.0 41.0 32.0 41.0 19 37.37162904897631 39.0 35.0 41.0 32.0 41.0 20 37.259028542321914 39.0 35.0 41.0 32.0 41.0 21 37.14152845544992 39.0 35.0 41.0 32.0 41.0 22 37.054218291935655 39.0 35.0 41.0 32.0 41.0 23 36.964585044287766 39.0 35.0 41.0 31.0 41.0 24 36.991309410906204 39.0 35.0 41.0 31.0 41.0 25 36.98671409453537 39.0 35.0 41.0 31.0 41.0 26 36.85055814193951 39.0 35.0 41.0 31.0 41.0 27 36.78669239772624 39.0 35.0 41.0 31.0 41.0 28 36.748244126394084 39.0 35.0 41.0 31.0 41.0 29 36.68444194705131 39.0 35.0 41.0 31.0 41.0 30 36.59223389838265 38.0 35.0 41.0 31.0 41.0 31 36.5326634443515 38.0 35.0 41.0 30.0 41.0 32 36.427794121012255 38.0 35.0 41.0 30.0 41.0 33 36.34579713313959 38.0 35.0 41.0 30.0 41.0 34 36.244970535563695 38.0 35.0 41.0 30.0 41.0 35 36.11117411096053 38.0 35.0 41.0 30.0 41.0 36 35.969140526673094 38.0 35.0 41.0 29.0 41.0 37 35.87490772499633 38.0 35.0 40.0 29.0 41.0 38 35.76887304569806 38.0 35.0 40.0 28.0 41.0 39 35.67031868035939 38.0 35.0 40.0 28.0 41.0 40 35.53024374161473 38.0 34.0 40.0 27.0 41.0 41 35.43123086167691 38.0 34.0 40.0 27.0 41.0 42 35.3706993068039 38.0 34.0 40.0 27.0 41.0 43 35.27198052033356 38.0 34.0 40.0 26.0 41.0 44 35.09981040717961 38.0 34.0 40.0 26.0 41.0 45 35.04568873384711 38.0 34.0 40.0 26.0 41.0 46 34.954625700378934 38.0 34.0 40.0 25.0 41.0 47 34.85858680884857 37.0 34.0 40.0 25.0 41.0 48 34.72052560520113 37.0 34.0 40.0 24.0 41.0 49 34.613299296464014 37.0 34.0 40.0 24.0 41.0 50 34.43075878657205 37.0 33.0 40.0 24.0 41.0 51 34.02503099846851 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 6.0 11 7.0 12 6.0 13 10.0 14 20.0 15 50.0 16 113.0 17 224.0 18 494.0 19 921.0 20 1606.0 21 2611.0 22 3819.0 23 5723.0 24 8119.0 25 11220.0 26 14997.0 27 18195.0 28 21005.0 29 24159.0 30 28395.0 31 34539.0 32 42437.0 33 54293.0 34 87920.0 35 124334.0 36 82927.0 37 110706.0 38 177327.0 39 323673.0 40 38.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.85651967926014 22.76613975626686 27.98981606021543 13.387524504257575 2 30.545717126155925 25.997099746842313 29.634620649090554 13.822562477911207 3 30.40485737314359 26.041849415669333 29.836248418294137 13.717044792892938 4 27.961932270359192 26.740130706324365 29.7568347067583 15.541102316558138 5 24.129648604920597 31.693698687258294 27.935489284234134 16.241163423586976 6 22.531373501246296 39.96314932574623 26.332722263044992 11.17275490996248 7 87.4335641161898 4.15400666329349 6.171640405899837 2.2407888146168693 8 87.53026747249973 4.05933738283935 5.9263647589577735 2.484030385703159 9 81.47168778291665 6.50243199194506 8.09774073499636 3.928139490141936 10 41.52252272867886 33.47105721940136 14.298705734483603 10.707714317436183 11 33.44224114477789 23.629943969685492 26.744114104875255 16.183700780661365 12 31.505546670599216 22.776140629224415 28.226362131609793 17.491950568566576 13 23.741648635431737 29.80734759051002 28.248906472344622 18.202097301713625 14 18.795877945278274 32.44944262083894 29.231026098040765 19.523653335842024 15 17.34617513223612 27.21957933616239 37.219774268431905 18.21447126316958 16 21.81910793908282 24.261100757099985 35.06441663975754 18.85537466405966 17 21.523743174192322 24.98489274911285 27.90726648173527 25.58409759495956 18 23.028874554304316 26.540537012976557 30.274591765213405 20.155996667505725 19 26.26034306384371 26.79776285557129 26.1671993402814 20.774694740303605 20 27.430445199877617 27.191187027342217 26.65571655830975 18.722651214470414 21 24.761059651817067 27.017782060637497 29.16618993013797 19.054968357407468 22 23.78368620311773 23.583075471842033 29.20009119440087 23.43314713063937 23 21.33296380955287 27.19415338796522 29.692507057819455 21.780375744662457 24 20.994120673245206 25.923025484427882 32.689039806016964 20.393814036309948 25 21.044803063318238 27.62707253260242 30.32663020585695 21.001494198222385 26 20.249140391068035 31.32053052088445 27.039987388729692 21.390341699317823 27 20.02539204693291 29.92108633211204 29.759885820541964 20.29363580041309 28 18.358297376804924 27.576474895690044 33.43156224653508 20.63366548096995 29 19.73384117427199 26.46807306061461 32.36214686536198 21.43593889975142 30 21.247278364128395 26.984643574820517 30.640216900288753 21.127861160762336 31 25.81174458448492 26.70733123315001 25.883530511561602 21.59739367080347 32 25.91539769996873 27.065159077444896 27.058039811949687 19.96140341063669 33 23.534766170267403 27.035834483857492 27.29322983277354 22.136169513101567 34 20.590187109552783 26.37526834969493 29.525712837645994 23.50883170310629 35 21.273721350253457 25.944891799877446 30.383499576657965 22.397887273211136 36 24.719869615737643 26.693431714802223 28.05024506376404 20.53645360569609 37 21.066245612964522 29.495032193488075 28.383155478825696 21.055566714721706 38 20.76579565843459 29.960496551817663 27.14643735851519 22.127270431232557 39 20.864363584278966 28.3779855360256 28.596902950003262 22.160747929692167 40 23.5545984098612 25.63418671290799 28.435787191593842 22.375427685636968 41 19.971828049397534 25.583504322834962 28.44850016569243 25.996167462075082 42 21.88665620812664 26.475700845073764 27.415020124637994 24.222622822161597 43 21.55772919161588 26.839122397972027 27.872602439026455 23.730545971385638 44 21.33076022737578 27.43281828837602 29.120507976543713 22.115913507704484 45 20.25541212495667 28.88328387986409 27.86989033788543 22.991413657293812 46 22.21354914878163 28.465450797823877 27.253904366228575 22.067095687165914 47 20.58866155266095 27.388407632191626 29.240433698873712 22.78249711627371 48 20.936234264516308 26.75911541431159 29.856334917369903 22.448315403802198 49 20.989628755730372 26.01769476488202 30.03821520014035 22.95446127924726 50 20.60112026727757 28.75632364519954 28.711489223211856 21.93106686431104 51 19.251595690132277 29.208820769948563 27.766321975562274 23.77326156435689 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 426.0 1 1276.5 2 2127.0 3 4501.5 4 6876.0 5 5130.5 6 3385.0 7 3237.5 8 3090.0 9 3173.0 10 3256.0 11 3239.5 12 3223.0 13 3046.0 14 2869.0 15 2907.0 16 2945.0 17 2971.5 18 2998.0 19 3041.5 20 3085.0 21 3637.0 22 4189.0 23 4911.0 24 5633.0 25 7599.5 26 11529.0 27 13492.0 28 14659.0 29 15826.0 30 19647.0 31 23468.0 32 27154.5 33 30841.0 34 34146.5 35 37452.0 36 41166.5 37 44881.0 38 49964.5 39 55048.0 40 65562.0 41 76076.0 42 82537.0 43 88998.0 44 91582.5 45 94167.0 46 99085.0 47 104003.0 48 102959.0 49 101915.0 50 96794.0 51 91673.0 52 82825.5 53 73978.0 54 68195.0 55 62412.0 56 58088.0 57 53764.0 58 48846.5 59 43929.0 60 39807.5 61 35686.0 62 32116.5 63 28547.0 64 23440.0 65 18333.0 66 14781.5 67 11230.0 68 9742.5 69 8255.0 70 6695.5 71 5136.0 72 4098.0 73 3060.0 74 2405.5 75 1393.0 76 1035.0 77 800.0 78 565.0 79 478.5 80 392.0 81 265.0 82 138.0 83 109.0 84 80.0 85 58.0 86 36.0 87 29.0 88 22.0 89 20.5 90 19.0 91 13.5 92 8.0 93 7.5 94 7.0 95 5.5 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1179897.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.804348435977996 #Duplication Level Percentage of deduplicated Percentage of total 1 81.07177520300027 18.48789010052499 2 6.910147007912365 3.151628002245287 3 2.115929661608485 1.447571918080227 4 1.1080580377134832 1.0107416631721726 5 0.6831051086012482 0.7788883457469726 6 0.4841630124279893 0.6624613221132368 7 0.39519065575698314 0.6308445788767414 8 0.3030479231274771 0.552864834543877 9 0.2605056870899395 0.5346596212157552 >10 4.151879380363952 24.280488341895577 >50 1.9757367907871894 32.07836827567707 >100 0.5371115634394759 15.444033628437506 >500 0.0018610934284112117 0.31779838032432534 >1k 0.0014888747427289693 0.6217609871462829 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3639 0.30841675163171023 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCG 1514 0.1283162852350671 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.475316065724381E-5 0.0 0.0 0.04466491566636749 0.0 2 8.475316065724381E-5 0.0 0.0 0.18137176380650175 0.0 3 8.475316065724381E-5 0.0 0.0 0.2700235698539788 0.0 4 8.475316065724381E-5 0.0 0.0 0.4502935425719364 0.0 5 8.475316065724381E-5 0.0 0.0 0.910418451780113 0.0 6 8.475316065724381E-5 0.0 0.0 1.1970536411229116 0.0 7 8.475316065724381E-5 0.0 0.0 1.409614568051279 0.0 8 8.475316065724381E-5 0.0 0.0 1.8807573881448973 0.0 9 8.475316065724381E-5 0.0 0.0 2.01627769203583 0.0 10 8.475316065724381E-5 0.0 0.0 2.4675882725356537 0.0 11 8.475316065724381E-5 0.0 0.0 2.8743186905297664 0.0 12 8.475316065724381E-5 0.0 0.0 3.312831543770346 0.0 13 8.475316065724381E-5 0.0 0.0 3.4456397465202473 0.0 14 8.475316065724381E-5 0.0 0.0 3.502593870481915 0.0 15 8.475316065724381E-5 0.0 0.0 3.6140442767461907 0.0 16 8.475316065724381E-5 0.0 0.0 3.8225370519630104 0.0 17 8.475316065724381E-5 0.0 0.0 4.056201515895031 0.0 18 8.475316065724381E-5 0.0 0.0 4.333598610726191 0.0 19 8.475316065724381E-5 0.0 0.0 4.500562337220961 0.0 20 8.475316065724381E-5 0.0 0.0 4.675238601335541 0.0 21 8.475316065724381E-5 0.0 0.0 4.8966138569722615 0.0 22 8.475316065724381E-5 0.0 0.0 5.1300240614223105 0.0 23 8.475316065724381E-5 0.0 0.0 5.360637411570671 0.0 24 8.475316065724381E-5 0.0 0.0 5.548111402944494 0.0 25 8.475316065724381E-5 0.0 0.0 5.722957173380388 0.0 26 8.475316065724381E-5 0.0 0.0 5.878394470025773 0.0 27 8.475316065724381E-5 0.0 0.0 6.0452734433598865 0.0 28 8.475316065724381E-5 0.0 0.0 6.218932669546579 0.0 29 8.475316065724381E-5 0.0 0.0 6.40555912931383 0.0 30 8.475316065724381E-5 0.0 0.0 6.6483769345968335 0.0 31 8.475316065724381E-5 0.0 0.0 6.852716804941449 0.0 32 8.475316065724381E-5 0.0 0.0 7.039851783672643 0.0 33 8.475316065724381E-5 0.0 0.0 7.229444604062897 0.0 34 8.475316065724381E-5 0.0 0.0 7.428529778446762 0.0 35 8.475316065724381E-5 0.0 0.0 7.660838191808268 0.0 36 8.475316065724381E-5 0.0 0.0 7.8469561326115755 0.0 37 8.475316065724381E-5 0.0 0.0 8.05655069891694 0.0 38 8.475316065724381E-5 0.0 0.0 8.278603979838918 0.0 39 8.475316065724381E-5 0.0 0.0 8.582189801313165 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCGATG 55 1.8189894E-12 45.000004 9 TAGTACG 55 1.8189894E-12 45.000004 1 TACGAAC 25 3.8908685E-5 45.0 31 CGTAAAC 20 7.033363E-4 45.0 41 ACGTAGC 20 7.033363E-4 45.0 16 ATCGATT 25 3.8908685E-5 45.0 13 CCGATTA 30 2.1655524E-6 44.999996 12 CGGTCTA 485 0.0 43.144333 31 TCACGAC 505 0.0 42.772278 25 TACGTAG 100 0.0 42.75 1 AATACGG 90 0.0 42.5 2 CGACGGT 510 0.0 42.35294 28 GACGGTC 510 0.0 42.35294 29 CACGACG 505 0.0 41.88119 26 CGCATCG 70 0.0 41.785717 21 CTCACGA 530 0.0 41.603775 24 TACGGGA 515 0.0 41.504852 4 CGACAAT 60 3.6379788E-12 41.249996 20 TACGCGG 60 3.6379788E-12 41.249996 2 CACGTAG 50 1.0822987E-9 40.5 1 >>END_MODULE