SRR1548087_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548087_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1119116
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4424	0.3953120141254347	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2311	0.20650227500991855	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2088	0.18657583306824316	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1960	0.17513823410620527	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1431	0.12786878214590802	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGACC	65	0.0	45.000004	14
ACGCCTA	25	3.8907405E-5	45.0	8
GCGGTAT	25	3.8907405E-5	45.0	9
CATTGCG	35	1.2118835E-7	45.0	1
GACCGTA	25	3.8907405E-5	45.0	5
GGTCCTA	35	1.2118835E-7	45.0	8
CGTCTAG	20	7.0332084E-4	45.0	29
CGCCTAG	25	3.8907405E-5	45.0	9
AACGGCC	35	1.2118835E-7	45.0	39
CGGATAT	25	3.8907405E-5	45.0	16
TCTCGAG	25	3.8907405E-5	45.0	1
TTGCGTG	20	7.0332084E-4	45.0	11
GGACGTA	20	7.0332084E-4	45.0	8
GCGATAT	110	0.0	45.0	9
CCGAATA	25	3.8907405E-5	45.0	38
CACACGG	25	3.8907405E-5	45.0	2
GCGGAAT	25	3.8907405E-5	45.0	22
CACGTTA	20	7.0332084E-4	45.0	15
CACGTGA	25	3.8907405E-5	45.0	43
CGTTTCA	20	7.0332084E-4	45.0	20