SRR1548084_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548084_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1647230
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5147	0.312463954639	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3667	0.22261614953588754	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2799	0.16992162600244048	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2140	0.129915069540987	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0341764E-4	45.000004	1
CGGCATG	20	7.0341764E-4	45.000004	30
CGTTGCA	40	6.8175723E-9	45.000004	36
TGCGGTA	35	1.2123564E-7	45.000004	4
CGTAGAT	20	7.0341764E-4	45.000004	32
AACGCGC	20	7.0341764E-4	45.000004	30
ACTCGTT	20	7.0341764E-4	45.000004	12
CTACCGT	35	1.2123564E-7	45.000004	27
ACTCGAC	20	7.0341764E-4	45.000004	22
CGTAATC	20	7.0341764E-4	45.000004	20
CGGTACC	40	6.8175723E-9	45.000004	41
GCGCTAA	20	7.0341764E-4	45.000004	36
TTCGATC	20	7.0341764E-4	45.000004	13
AGTCGTG	20	7.0341764E-4	45.000004	39
TGCGTCG	40	6.8175723E-9	45.000004	1
CGGACGT	35	1.2123564E-7	45.000004	40
CATGACG	25	3.8915437E-5	45.0	1
CGCATCG	50	2.1827873E-11	45.0	21
GTTCGGT	25	3.8915437E-5	45.0	37
CTCGATT	25	3.8915437E-5	45.0	41