SRR1548083_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548083_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1521117
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4601	0.30247508902996945	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2845	0.18703360753972245	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1917	0.12602580866560562	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1754	0.11530999916508725	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1745	0.11471832870186843	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	65	0.0	45.000004	1
GTCGACG	20	7.034006E-4	45.000004	42
CAACGTA	20	7.034006E-4	45.000004	33
ATAGCCG	20	7.034006E-4	45.000004	21
CGCGAAT	20	7.034006E-4	45.000004	15
TAGCCGA	20	7.034006E-4	45.000004	22
ACGATAT	20	7.034006E-4	45.000004	39
CGTAAAC	20	7.034006E-4	45.000004	31
CGCACCG	20	7.034006E-4	45.000004	39
TTCGCGA	20	7.034006E-4	45.000004	42
CAATCGT	20	7.034006E-4	45.000004	40
GCCGTAT	20	7.034006E-4	45.000004	42
AATCGTA	20	7.034006E-4	45.000004	10
TCGCACG	35	1.2122837E-7	45.0	1
TCGCAAT	25	3.8914033E-5	45.0	44
GCGCGTC	85	0.0	45.0	38
TCGATAG	55	1.8189894E-12	45.0	1
CGCATCG	140	0.0	43.392857	21
TATAGCG	80	0.0	42.187504	1
TATTACG	75	0.0	42.0	1