##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548080_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2100963 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59104753391659 31.0 31.0 33.0 30.0 34.0 2 32.004670239314066 31.0 31.0 34.0 30.0 34.0 3 32.05661308647511 33.0 31.0 34.0 30.0 34.0 4 35.771195399443016 37.0 35.0 37.0 35.0 37.0 5 35.69989666643344 37.0 35.0 37.0 33.0 37.0 6 35.77162758220873 37.0 35.0 37.0 35.0 37.0 7 36.11224567019981 37.0 35.0 37.0 35.0 37.0 8 36.15141913493955 37.0 35.0 37.0 35.0 37.0 9 37.997677255620395 39.0 39.0 39.0 35.0 39.0 10 37.46141840670207 39.0 37.0 39.0 35.0 39.0 11 37.07790332338075 39.0 37.0 39.0 33.0 39.0 12 36.50053094699906 39.0 35.0 39.0 33.0 39.0 13 36.28702123740399 39.0 35.0 39.0 32.0 39.0 14 37.362085862530655 40.0 35.0 41.0 32.0 41.0 15 37.56519700727714 40.0 35.0 41.0 33.0 41.0 16 37.67713186762451 40.0 35.0 41.0 33.0 41.0 17 37.617431625402254 39.0 35.0 41.0 33.0 41.0 18 37.53031871575082 39.0 36.0 41.0 33.0 41.0 19 37.463650716361975 39.0 36.0 41.0 33.0 41.0 20 37.338631379990986 39.0 35.0 41.0 32.0 41.0 21 37.22334615126492 39.0 35.0 41.0 32.0 41.0 22 37.144327149026424 39.0 35.0 41.0 32.0 41.0 23 37.06865185155569 39.0 35.0 41.0 32.0 41.0 24 37.078127982263375 39.0 35.0 41.0 32.0 41.0 25 37.06038659414754 39.0 35.0 41.0 32.0 41.0 26 36.94781012326252 39.0 35.0 41.0 32.0 41.0 27 36.89218277523212 39.0 35.0 41.0 32.0 41.0 28 36.8552587551518 38.0 35.0 41.0 32.0 41.0 29 36.82380889144645 38.0 35.0 41.0 31.0 41.0 30 36.74821212939019 38.0 35.0 41.0 31.0 41.0 31 36.65325757759656 38.0 35.0 41.0 31.0 41.0 32 36.53034346630569 38.0 35.0 41.0 31.0 41.0 33 36.425410157151745 38.0 35.0 41.0 30.0 41.0 34 36.29940651025268 38.0 35.0 41.0 30.0 41.0 35 36.17417346235988 38.0 35.0 41.0 30.0 41.0 36 36.015552867899146 38.0 35.0 41.0 30.0 41.0 37 35.93774140715472 38.0 35.0 41.0 29.0 41.0 38 35.85264090800266 38.0 35.0 41.0 29.0 41.0 39 35.81389486630655 38.0 35.0 40.0 29.0 41.0 40 35.686956409989136 38.0 35.0 40.0 29.0 41.0 41 35.62211376402155 38.0 35.0 40.0 28.0 41.0 42 35.59624895821583 38.0 35.0 40.0 28.0 41.0 43 35.5129028926259 38.0 35.0 40.0 28.0 41.0 44 35.3721674298881 38.0 34.0 40.0 27.0 41.0 45 35.33432621136117 38.0 34.0 40.0 27.0 41.0 46 35.258899847355714 38.0 34.0 40.0 27.0 41.0 47 35.17586268772939 38.0 34.0 40.0 27.0 41.0 48 35.084769222494636 37.0 34.0 40.0 27.0 41.0 49 34.991486761070995 37.0 34.0 40.0 26.0 41.0 50 34.828308732709715 37.0 34.0 40.0 26.0 41.0 51 34.45861302650261 36.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 4.0 13 9.0 14 16.0 15 37.0 16 126.0 17 315.0 18 620.0 19 1215.0 20 2340.0 21 3823.0 22 5912.0 23 8772.0 24 13094.0 25 19124.0 26 25962.0 27 30623.0 28 33610.0 29 37797.0 30 45332.0 31 55763.0 32 69226.0 33 91496.0 34 159381.0 35 255459.0 36 139432.0 37 184615.0 38 301918.0 39 614821.0 40 118.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.572028160419766 24.266776711441373 31.21054487870562 13.950650249433236 2 30.12223442297651 25.49659370488676 31.323778667211176 13.057393204925551 3 28.508403051362635 25.757854850370997 32.38448273482208 13.349259363444288 4 25.7148269626833 27.988403413101516 31.85524923570763 14.441520388507556 5 23.02877299600231 32.423702844838296 30.713153920368896 13.834370238790497 6 21.615849493779756 40.60675985250573 27.217756809615402 10.55963384409911 7 89.66583419127325 3.456081806295494 5.596719218758255 1.2813647836730109 8 91.14339471946911 2.3907608082579275 5.185526827459598 1.2803176448133546 9 86.78077624403666 5.0696275945840075 6.332143878783206 1.817452282596124 10 45.6737695999406 35.47059134311266 10.793383795906925 8.06225526103982 11 35.053592090864996 23.21502092135844 26.687142991095037 15.044243996681523 12 33.817016292052735 22.935625234713797 26.912277845921135 16.335080627312333 13 22.975130928055375 32.19523618454966 27.08553172997335 17.74410115742162 14 16.630754563502546 35.02398661946926 29.641026519743562 18.704232297284626 15 15.988001692557175 27.74242097552408 40.13768924060062 16.131888091318125 16 20.31230440517039 24.484724385912553 38.30476786121412 16.898203347702932 17 20.124152590978518 25.07216928617972 28.464470816477967 26.339207306363793 18 21.98639385843539 27.170064394280146 31.89266065132989 18.950881095954568 19 26.997810051866693 27.913580581856984 26.72431642061283 18.36429294566349 20 28.541387925441807 27.45217312251572 27.346364500469544 16.66007445157292 21 24.330271404113258 27.913770970740558 29.312510501136856 18.443447124009325 22 23.48180334446632 24.365969319783357 29.27471830774745 22.877509028002873 23 20.654671215057096 28.565900494201944 29.50551723185987 21.273911058881094 24 20.26937171192448 25.931251526085898 35.5999605895011 18.19941617248852 25 19.759653073376352 28.359614138849658 32.283338640423466 19.597394147350524 26 18.862778640080762 35.23845969681522 26.35953131968531 19.53923034341871 27 18.754304573664555 33.118527075441115 30.58150000737757 17.54566834351676 28 16.783541642570572 30.16845132446407 35.52109199448063 17.526915038484734 29 18.119595633050178 27.556696619597776 34.85658719358694 19.467120553765106 30 19.7061061998712 29.8185165564553 31.85172704136151 18.623650202311985 31 25.998649190871042 28.12058089552267 27.16354357501774 18.717226338588542 32 26.45677244197066 28.188311740854076 27.790684557510055 17.56423125966521 33 24.43251023459242 28.972618746736618 27.044264939458717 19.550606079212248 34 20.15670909006965 29.003033370887543 29.380050957584693 21.46020658145812 35 20.19378732514566 27.721049823342913 30.734334683666493 21.350828167844934 36 24.95588927553698 27.953514650186605 28.482652954859272 18.607943119417143 37 20.517734010546594 32.145116310948836 29.231928406164222 18.105221272340348 38 20.513545455107966 31.295458320779566 26.90609020720498 21.284906016907485 39 20.725638671409254 30.491922037656067 27.855369180704276 20.927070110230403 40 23.107641591022784 27.55883849453798 27.816339459571633 21.517180454867603 41 18.011597538842903 27.231417212011827 29.853024541603062 24.903960707542208 42 21.193614547233818 27.77602461347487 27.12108685398077 23.909273985310545 43 20.966385414688407 27.913961359624135 28.282078266014203 22.837574959673255 44 20.29126643353548 30.01571184261693 28.87870942991381 20.81431229393378 45 19.17972853401036 33.114576506106964 26.162859602953503 21.54283535692918 46 21.331456098941295 31.731496461384612 26.940883775678103 19.996163663995986 47 20.52692027417903 28.429677248004843 28.919928623207547 22.123473854608577 48 21.404184652466512 26.949927247647864 31.023011828385368 20.62287627150026 49 20.52415963536721 27.111567409802078 30.33175738934955 22.032515565481162 50 19.154835187483073 30.84309433340806 29.02564205081194 20.976428428296927 51 18.471767470440938 31.91131876192013 27.501007871152417 22.115905896486517 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1320.0 1 2188.5 2 3057.0 3 11748.0 4 20439.0 5 14803.0 6 9167.0 7 8624.5 8 8082.0 9 8339.0 10 8596.0 11 8625.5 12 8655.0 13 8584.0 14 8513.0 15 8037.5 16 7562.0 17 7375.0 18 7188.0 19 7709.5 20 8231.0 21 8739.0 22 9247.0 23 11068.5 24 12890.0 25 14844.5 26 22127.5 27 27456.0 28 32415.5 29 37375.0 30 42413.0 31 47451.0 32 55247.0 33 63043.0 34 71154.5 35 79266.0 36 84028.0 37 88790.0 38 98554.5 39 108319.0 40 130903.5 41 153488.0 42 169954.0 43 186420.0 44 188438.0 45 190456.0 46 184474.5 47 178493.0 48 170531.5 49 162570.0 50 152363.0 51 142156.0 52 127753.0 53 113350.0 54 102085.0 55 90820.0 56 84739.0 57 78658.0 58 74113.5 59 69569.0 60 63859.0 61 58149.0 62 47964.0 63 37779.0 64 31185.0 65 24591.0 66 18914.0 67 13237.0 68 10202.5 69 7168.0 70 5888.0 71 4608.0 72 4169.5 73 3731.0 74 2904.0 75 1633.5 76 1190.0 77 865.5 78 541.0 79 387.5 80 234.0 81 173.5 82 113.0 83 86.5 84 60.0 85 43.5 86 27.0 87 20.0 88 13.0 89 12.0 90 11.0 91 7.5 92 4.0 93 4.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2100963.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.567394958880733 #Duplication Level Percentage of deduplicated Percentage of total 1 80.36842297258298 15.726006745269144 2 7.017878580225377 2.746432039054782 3 2.2634642423890265 1.328702964183895 4 1.1052922697758811 0.8651076155080968 5 0.7294670174502428 0.7136884619962821 6 0.5102210684747297 0.59902182979123 7 0.3937357598490192 0.5393068185680541 8 0.30767251348106667 0.48162796714204703 9 0.2652282351874283 0.46708430689433855 >10 3.9857294298229524 19.844587524951592 >50 2.0277939963277403 28.667956119823934 >100 1.0219217599888064 26.90048166096276 >500 0.0021961069233247753 0.29412009321141136 >1k 7.320356411082585E-4 0.21080198239097095 >5k 0.0 0.0 >10k+ 2.4401188036941946E-4 0.6150738702515262 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12882 0.6131473995496352 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2292 0.10909283028782514 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027320804792849755 0.0 2 0.0 0.0 0.0 0.08362831710982059 0.0 3 0.0 0.0 0.0 0.132748649071878 0.0 4 0.0 0.0 0.0 0.2173289105995679 0.0 5 0.0 0.0 0.0 0.37782673945233686 0.0 6 0.0 0.0 0.0 0.5874449002671632 0.0 7 0.0 0.0 0.0 0.718432452165983 0.0 8 0.0 0.0 0.0 1.0120121106368842 0.0 9 0.0 0.0 0.0 1.1286728990467705 0.0 10 0.0 0.0 0.0 1.3247734491278522 0.0 11 0.0 0.0 0.0 1.5806085114302346 0.0 12 0.0 0.0 0.0 1.7994605330983935 0.0 13 0.0 0.0 0.0 1.889609669470619 0.0 14 0.0 0.0 0.0 1.92930575169577 0.0 15 0.0 0.0 0.0 1.9799491947264183 0.0 16 0.0 0.0 0.0 2.0936589554409095 0.0 17 0.0 0.0 0.0 2.236641007004883 0.0 18 0.0 0.0 0.0 2.4117035854510527 0.0 19 0.0 0.0 0.0 2.519368499112074 0.0 20 0.0 0.0 0.0 2.641502967924709 0.0 21 0.0 0.0 0.0 2.795908352503114 0.0 22 0.0 0.0 0.0 2.965164070000281 0.0 23 0.0 0.0 0.0 3.1415593706314677 0.0 24 0.0 0.0 0.0 3.271356992007951 0.0 25 0.0 0.0 0.0 3.380878197283817 0.0 26 0.0 0.0 0.0 3.491684527523807 0.0 27 0.0 0.0 0.0 3.6017768994503947 0.0 28 0.0 0.0 0.0 3.72391136826303 0.0 29 0.0 0.0 0.0 3.8634188227017803 0.0 30 0.0 0.0 0.0 4.032246165210906 0.0 31 4.7597220893466474E-5 0.0 0.0 4.195457035654602 0.0 32 4.7597220893466474E-5 0.0 0.0 4.3335365734665485 0.0 33 4.7597220893466474E-5 0.0 0.0 4.477375375006604 0.0 34 4.7597220893466474E-5 0.0 0.0 4.62725902360013 0.0 35 4.7597220893466474E-5 0.0 0.0 4.803178352022382 0.0 36 4.7597220893466474E-5 0.0 0.0 4.969435444603261 0.0 37 4.7597220893466474E-5 0.0 0.0 5.13983349540187 0.0 38 4.7597220893466474E-5 0.0 0.0 5.326462198525152 0.0 39 4.7597220893466474E-5 0.0 0.0 5.579774608120181 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCGT 20 7.0346217E-4 45.0 38 TACGCGG 125 0.0 43.2 2 TTACGAG 95 0.0 42.63158 1 CGTTTTT 6085 0.0 42.226788 1 CTACGCG 70 0.0 41.785713 1 CGGTCTA 320 0.0 41.484375 31 TATCGCG 60 3.6379788E-12 41.250004 1 CGGTAGT 185 0.0 40.135136 12 TCTCACG 350 0.0 39.857143 23 TAATACG 40 3.4600453E-7 39.375 1 CGCGTGG 40 3.4600453E-7 39.375 2 AGTACCG 40 3.4600453E-7 39.375 1 TAGGGAC 2455 0.0 38.85947 5 AGGGCGA 1230 0.0 38.78049 6 CACGACG 350 0.0 38.571426 26 GGGCGAT 2590 0.0 38.310814 7 CTCACGA 365 0.0 38.219177 24 ATCCGTT 65 9.094947E-12 38.076927 11 TCGCGTA 65 9.094947E-12 38.076927 30 CGTAAGG 290 0.0 38.017242 2 >>END_MODULE