SRR1548079_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548079_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2058722
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50440	2.4500636802832045	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4369	0.2122190368587891	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT	3862	0.1875921081136744	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	3247	0.1577192063814347	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2612	0.12687482817009776	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	2279	0.11069974479312894	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAC	20	7.034588E-4	45.000004	34
TCCAACG	20	7.034588E-4	45.000004	41
CCCGATA	35	1.2125565E-7	45.000004	36
CCTAGCG	25	3.8918857E-5	45.0	1
CGTTTTT	19050	0.0	44.35039	1
CGACGGT	575	0.0	43.043476	28
CGGTCTA	575	0.0	43.043476	31
TCACGAC	600	0.0	42.000004	25
TATAGCG	115	0.0	41.08696	1
GCGTAAG	115	0.0	41.08696	1
TAAGTCG	55	6.184564E-11	40.909092	1
GACGGTC	615	0.0	40.609756	29
CGGTTTT	1530	0.0	40.588234	1
CTCACGA	625	0.0	40.32	24
ACGGTCT	620	0.0	40.282257	30
GCGATAT	185	0.0	40.135136	9
CGTAAGG	320	0.0	40.07813	2
CCGCTCG	135	0.0	40.000004	19
TAGGGTA	1120	0.0	39.97768	5
ACGGGTA	125	0.0	39.6	5