##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548079_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2058722 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.38832100691594 31.0 31.0 33.0 30.0 34.0 2 31.73733316105817 31.0 31.0 34.0 30.0 34.0 3 31.477459316993748 31.0 31.0 34.0 30.0 34.0 4 35.380958186680864 37.0 35.0 37.0 33.0 37.0 5 35.38943140453155 37.0 35.0 37.0 33.0 37.0 6 35.513846939994814 37.0 35.0 37.0 33.0 37.0 7 35.9954384321924 37.0 35.0 37.0 35.0 37.0 8 36.046805736762906 37.0 35.0 37.0 35.0 37.0 9 37.8560825599571 39.0 38.0 39.0 35.0 39.0 10 37.24108888912636 39.0 37.0 39.0 34.0 39.0 11 36.87661957272522 39.0 37.0 39.0 32.0 39.0 12 36.36099920241781 38.0 35.0 39.0 32.0 39.0 13 36.14959814875442 38.0 35.0 39.0 32.0 39.0 14 37.196704071749366 39.0 35.0 41.0 32.0 41.0 15 37.40386074467558 39.0 35.0 41.0 32.0 41.0 16 37.5232216880181 39.0 35.0 41.0 32.0 41.0 17 37.46002131419395 39.0 35.0 41.0 32.0 41.0 18 37.28663170646644 39.0 35.0 41.0 32.0 41.0 19 37.10558734982188 38.0 35.0 41.0 32.0 41.0 20 36.84952946536735 38.0 35.0 41.0 32.0 41.0 21 36.7125323380233 38.0 35.0 41.0 32.0 41.0 22 36.64131582603188 38.0 35.0 40.0 31.0 41.0 23 36.563787631355765 38.0 35.0 40.0 31.0 41.0 24 36.512991554954965 38.0 35.0 40.0 31.0 41.0 25 36.46451633586273 38.0 35.0 40.0 31.0 41.0 26 36.32396651903463 38.0 35.0 40.0 31.0 41.0 27 36.263189979025825 38.0 35.0 40.0 31.0 41.0 28 36.184608218108124 38.0 35.0 40.0 31.0 41.0 29 36.08054657209667 37.0 35.0 40.0 30.0 41.0 30 35.948050781018516 37.0 35.0 40.0 30.0 41.0 31 35.72493906413785 37.0 35.0 40.0 30.0 41.0 32 35.451511665975296 37.0 34.0 40.0 29.0 41.0 33 35.1727348325806 37.0 34.0 40.0 26.0 41.0 34 34.858887212552254 37.0 34.0 40.0 24.0 41.0 35 34.57680735912862 37.0 34.0 40.0 23.0 41.0 36 34.333940668045514 37.0 33.0 40.0 22.0 41.0 37 34.207412171240215 37.0 33.0 40.0 21.0 41.0 38 34.06661948529233 37.0 33.0 40.0 21.0 41.0 39 34.02343638431998 37.0 33.0 40.0 21.0 41.0 40 33.87639079001439 37.0 33.0 40.0 20.0 41.0 41 33.80573433421317 36.0 33.0 40.0 18.0 41.0 42 33.73407337173256 36.0 33.0 40.0 18.0 41.0 43 33.6055654916011 36.0 33.0 40.0 18.0 41.0 44 33.40172398215981 36.0 33.0 40.0 18.0 41.0 45 33.38795864618924 36.0 33.0 40.0 18.0 41.0 46 33.287380714831826 35.0 33.0 40.0 18.0 41.0 47 33.19859213628649 35.0 33.0 40.0 18.0 41.0 48 33.04091421765542 35.0 32.0 40.0 18.0 41.0 49 32.92914099135289 35.0 32.0 40.0 17.0 41.0 50 32.734152547065605 35.0 32.0 40.0 15.0 41.0 51 32.41327338028155 35.0 31.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 2.0 13 6.0 14 23.0 15 74.0 16 170.0 17 470.0 18 1109.0 19 2244.0 20 4067.0 21 6528.0 22 10099.0 23 15630.0 24 23920.0 25 36638.0 26 48198.0 27 51869.0 28 50251.0 29 50808.0 30 55841.0 31 65210.0 32 77693.0 33 97962.0 34 156190.0 35 248279.0 36 156194.0 37 179558.0 38 256964.0 39 462637.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.630480463122264 24.370798971400703 29.000418706362492 17.998301859114537 2 35.95337301490925 24.052737572144274 27.850044833639508 12.143844579306968 3 26.51557616812761 24.15221676360383 36.70957030623853 12.622636762030037 4 23.582542956261214 25.870078621591453 36.92630670872512 13.62107171342221 5 21.193002260625768 30.086577983817143 35.64818367900086 13.072236076556232 6 18.85140392923377 39.497804948895485 32.10414033560626 9.546650786264488 7 82.8174469403834 2.7413609025405083 12.80454573274099 1.636646424335097 8 83.14410590647985 2.213169140855346 12.603790118335551 2.038934834329259 9 78.89826795458542 4.698011679090232 14.081065826274747 2.3226545400496037 10 40.48730231667996 30.658680482357504 19.301488981999512 9.552528218963026 11 30.221856083531435 22.634041895894637 32.52051515454733 14.623586866026594 12 30.69005917263234 21.174009895459417 32.165100484669615 15.970830447238626 13 21.31812843113349 30.66067200913965 32.51492916479253 15.506270394934333 14 15.466925597530896 34.0479676226319 33.55324322565164 16.931863554185558 15 13.720065166642218 28.031468066110914 43.32513083359482 14.923335933652043 16 17.36922226507513 25.337758084870128 41.69358466077499 15.599434989279755 17 17.19736807592283 25.806592633682452 32.5006484605498 24.495390829844922 18 18.893517434602632 27.531011957903985 36.28867812166966 17.286792485823728 19 21.283058130238082 29.645527662307003 30.572801961605307 18.49861224584961 20 23.26967895616795 27.932960351130458 31.2137335686897 17.583627124011887 21 19.54343519911868 29.583790332060378 33.61357191500358 17.259202553817367 22 19.900064214595268 24.940278483447496 33.002707504947246 22.15694979700999 23 16.4236842079698 30.59728316887856 32.159805937858536 20.81922668529311 24 17.28713250259141 28.126041301351034 37.92381875746215 16.6630074385954 25 17.075884942211722 29.596128083344908 34.62376173179283 18.704225242650537 26 16.375838991374263 33.51001252233182 31.220922494635023 18.893225991658902 27 16.557310797669622 33.13303107461814 32.714810450366784 17.59484767734546 28 15.131620490770487 29.447055017627438 37.910218086754796 17.51110640484728 29 16.11951492236446 26.945308788656263 37.09636366639109 19.83881262258819 30 17.80439515388673 30.262512374181654 34.268832800154655 17.664259671776957 31 21.95959435028139 29.32134596123226 30.303751550719333 18.415308137767024 32 22.375920595398505 28.971031542869802 30.89387493794694 17.759172923784757 33 20.8955361627262 30.01779744909706 30.453893240563808 18.632773147612937 34 16.537881268087677 30.925545071165512 32.22610920755692 20.31046445318989 35 16.983206086105845 30.39006723588712 32.670996861159495 19.95572981684754 36 22.034689482115606 29.82593084447536 30.09750709420699 18.04187257920205 37 17.33225758504548 33.43486881667365 31.584740436056936 17.648133162223942 38 16.622788312360775 33.44759515854982 29.526327498321773 20.40328903076763 39 16.99282370324891 33.251891221835685 30.40376505424239 19.351520020673018 40 20.248047089407894 31.009529212783466 28.876166864685953 19.866256833122684 41 16.57868328020976 29.023491272741047 30.82363718850821 23.57418825854098 42 19.272538982922416 29.86469275599134 28.63922375143414 22.223544509652104 43 19.436815655537757 30.51951647672682 29.198211317506683 20.845456550228732 44 18.631753097309883 32.456640576046695 29.10213229372397 19.809474032919454 45 17.166960862127087 35.16220257033247 27.000440078845028 20.670396488695413 46 20.264707911024413 33.22318409187836 27.78145859421525 18.730649402881983 47 18.862964499335025 31.17234867068016 29.039617782294062 20.92506904769075 48 19.05978563400012 29.54386264876948 30.997240035322886 20.399111681907513 49 19.068188905544314 28.278903125336978 31.09754498178967 21.555362987329033 50 17.37330246628734 31.131352363262256 31.261433063813378 20.23391210663703 51 16.559885210339228 33.07032226789241 28.42088441275704 21.94890810901132 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1725.0 1 2231.0 2 2737.0 3 33971.5 4 65206.0 5 44284.0 6 23362.0 7 21532.0 8 19702.0 9 21705.0 10 23708.0 11 25622.0 12 27536.0 13 28375.5 14 29215.0 15 28072.5 16 26930.0 17 24914.0 18 22898.0 19 21483.5 20 20069.0 21 18867.5 22 17666.0 23 17748.5 24 17831.0 25 18420.0 26 20994.0 27 22979.0 28 26553.0 29 30127.0 30 35235.5 31 40344.0 32 46220.0 33 52096.0 34 59646.5 35 67197.0 36 69852.0 37 72507.0 38 79588.5 39 86670.0 40 105662.0 41 124654.0 42 148606.5 43 172559.0 44 184580.0 45 196601.0 46 196192.0 47 195783.0 48 181648.5 49 167514.0 50 149755.0 51 131996.0 52 116525.5 53 101055.0 54 90857.0 55 80659.0 56 71565.0 57 62471.0 58 54623.5 59 46776.0 60 39551.5 61 32327.0 62 27027.0 63 21727.0 64 18401.0 65 15075.0 66 11618.0 67 8161.0 68 6313.5 69 4466.0 70 3784.5 71 3103.0 72 2426.5 73 1750.0 74 1410.5 75 781.0 76 491.0 77 420.5 78 350.0 79 317.5 80 285.0 81 202.5 82 120.0 83 94.5 84 69.0 85 66.0 86 63.0 87 51.5 88 40.0 89 29.5 90 19.0 91 16.0 92 13.0 93 8.5 94 4.0 95 4.0 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2058722.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.615161369724124 #Duplication Level Percentage of deduplicated Percentage of total 1 77.8487163785719 23.05502297977292 2 8.122033873595218 4.810706876337758 3 3.4402556559442568 3.0565117921168588 4 1.9996058010311295 2.368745938934935 5 1.2645042883787734 1.872424927652277 6 0.8999572442858079 1.5991427409225865 7 0.6135525918708872 1.2719321311948169 8 0.5127413408988482 1.214793404131849 9 0.40942382479533196 1.0912637375931071 >10 3.6175373170554503 23.50919660978051 >50 0.9705923625853698 20.454708327265266 >100 0.2966029690129384 11.54426083107042 >500 0.0024868622078710097 0.4912376666877571 >1k 0.0018236989524387406 1.1834875280201596 >5k 0.0 0.0 >10k+ 1.657908138580673E-4 2.4765645085187873 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50440 2.4500636802832045 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4369 0.2122190368587891 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT 3862 0.1875921081136744 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT 3247 0.1577192063814347 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2612 0.12687482817009776 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC 2279 0.11069974479312894 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.8573823954861314E-5 0.0 0.0 0.07310360505206628 0.0 2 4.8573823954861314E-5 0.0 0.0 0.24592927068346285 0.0 3 4.8573823954861314E-5 0.0 0.0 0.44751064009613734 0.0 4 4.8573823954861314E-5 0.0 0.0 0.6410287547323048 0.0 5 4.8573823954861314E-5 0.0 0.0 1.185881338033984 0.0 6 4.8573823954861314E-5 0.0 0.0 2.0586072330309775 0.0 7 4.8573823954861314E-5 0.0 0.0 2.6923984879940077 0.0 8 4.8573823954861314E-5 0.0 0.0 3.7477619610612796 0.0 9 4.8573823954861314E-5 0.0 0.0 4.2722135383019175 0.0 10 4.8573823954861314E-5 0.0 0.0 4.918439692197392 0.0 11 4.8573823954861314E-5 0.0 0.0 5.5165291865535995 0.0 12 4.8573823954861314E-5 0.0 0.0 5.954859373922268 0.0 13 4.8573823954861314E-5 0.0 0.0 6.173490155543099 0.0 14 4.8573823954861314E-5 0.0 0.0 6.276029497911812 0.0 15 4.8573823954861314E-5 0.0 0.0 6.395035366601221 0.0 16 4.8573823954861314E-5 0.0 0.0 6.627315392753369 0.0 17 4.8573823954861314E-5 0.0 0.0 6.9124923131923595 0.0 18 4.8573823954861314E-5 0.0 0.0 7.2867050529406105 0.0 19 4.8573823954861314E-5 0.0 0.0 7.481388939351695 0.0 20 4.8573823954861314E-5 0.0 0.0 7.676947154593966 0.0 21 4.8573823954861314E-5 0.0 0.0 7.931959730356988 0.0 22 4.8573823954861314E-5 0.0 0.0 8.204118865976076 0.0 23 4.8573823954861314E-5 0.0 0.0 8.514117010456001 0.0 24 4.8573823954861314E-5 0.0 0.0 8.737556600648363 0.0 25 4.8573823954861314E-5 0.0 0.0 8.933551980306229 0.0 26 4.8573823954861314E-5 0.0 0.0 9.127992997597538 0.0 27 4.8573823954861314E-5 0.0 0.0 9.324862706086591 0.0 28 4.8573823954861314E-5 0.0 0.0 9.534750199395548 0.0 29 4.8573823954861314E-5 0.0 0.0 9.769993228808941 0.0 30 4.8573823954861314E-5 0.0 0.0 10.059298924284095 0.0 31 4.8573823954861314E-5 0.0 0.0 10.303673832601001 0.0 32 4.8573823954861314E-5 0.0 0.0 10.513172735318319 0.0 33 4.8573823954861314E-5 0.0 0.0 10.742538332033174 0.0 34 4.8573823954861314E-5 0.0 0.0 10.972681109931306 0.0 35 4.8573823954861314E-5 0.0 0.0 11.25227204061549 0.0 36 4.8573823954861314E-5 0.0 0.0 11.499075640130139 0.0 37 4.8573823954861314E-5 0.0 0.0 11.751125212631914 0.0 38 4.8573823954861314E-5 0.0 0.0 12.031687619795193 0.0 39 4.8573823954861314E-5 0.0 0.0 12.375395998099792 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGCGAC 20 7.034588E-4 45.000004 34 TCCAACG 20 7.034588E-4 45.000004 41 CCCGATA 35 1.2125565E-7 45.000004 36 CCTAGCG 25 3.8918857E-5 45.0 1 CGTTTTT 19050 0.0 44.35039 1 CGACGGT 575 0.0 43.043476 28 CGGTCTA 575 0.0 43.043476 31 TCACGAC 600 0.0 42.000004 25 TATAGCG 115 0.0 41.08696 1 GCGTAAG 115 0.0 41.08696 1 TAAGTCG 55 6.184564E-11 40.909092 1 GACGGTC 615 0.0 40.609756 29 CGGTTTT 1530 0.0 40.588234 1 CTCACGA 625 0.0 40.32 24 ACGGTCT 620 0.0 40.282257 30 GCGATAT 185 0.0 40.135136 9 CGTAAGG 320 0.0 40.07813 2 CCGCTCG 135 0.0 40.000004 19 TAGGGTA 1120 0.0 39.97768 5 ACGGGTA 125 0.0 39.6 5 >>END_MODULE