SRR1548078_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548078_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1363883
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3908	0.28653484206489854	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2795	0.20492960173269995	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1462	0.10719394552171997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAA	25	3.8911894E-5	45.000004	16
GTCGATG	30	2.1658016E-6	45.000004	1
GTCGATC	20	7.033749E-4	45.000004	31
GTCGACG	30	2.1658016E-6	45.000004	1
ACGTTAG	55	1.8189894E-12	45.000004	1
GTTTACG	65	0.0	45.000004	1
TAGGTCG	25	3.8911894E-5	45.000004	28
CACGCAC	20	7.033749E-4	45.000004	45
CATTACG	20	7.033749E-4	45.000004	34
CGTTACA	35	1.2121563E-7	45.000004	38
ACGATTG	50	2.1827873E-11	45.000004	1
CCGTATG	20	7.033749E-4	45.000004	35
GCGATAT	110	0.0	45.000004	9
TATAGCG	60	0.0	45.000004	1
ACCGTTG	25	3.8911894E-5	45.000004	28
ACGTAAG	65	0.0	45.000004	1
CACGTAA	20	7.033749E-4	45.000004	19
GTAAGCG	50	2.1827873E-11	45.000004	1
CGCAACA	30	2.1658016E-6	45.000004	14
TGTCGAT	20	7.033749E-4	45.000004	30