##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548077_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3110137 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.47436720633207 31.0 31.0 33.0 30.0 34.0 2 31.852194613935012 31.0 31.0 34.0 30.0 34.0 3 31.799654484673827 31.0 31.0 34.0 30.0 34.0 4 35.597444099729366 37.0 35.0 37.0 33.0 37.0 5 35.54639586616281 37.0 35.0 37.0 33.0 37.0 6 35.63166027734469 37.0 35.0 37.0 33.0 37.0 7 36.030222141339756 37.0 35.0 37.0 35.0 37.0 8 36.05514290849567 37.0 35.0 37.0 35.0 37.0 9 37.86477187339336 39.0 38.0 39.0 35.0 39.0 10 37.274311067325975 39.0 37.0 39.0 34.0 39.0 11 36.94929612425433 39.0 37.0 39.0 33.0 39.0 12 36.255269140877076 38.0 35.0 39.0 32.0 39.0 13 35.96037441437467 38.0 35.0 39.0 31.0 39.0 14 36.94268837674996 39.0 35.0 41.0 31.0 41.0 15 37.17037577444338 39.0 35.0 41.0 32.0 41.0 16 37.30768451679138 39.0 35.0 41.0 32.0 41.0 17 37.25493539352125 39.0 35.0 41.0 32.0 41.0 18 37.140927875524454 39.0 35.0 41.0 32.0 41.0 19 37.03717971266217 38.0 35.0 41.0 32.0 41.0 20 36.85902003673793 38.0 35.0 41.0 32.0 41.0 21 36.726432308287386 38.0 35.0 41.0 32.0 41.0 22 36.64266815256048 38.0 35.0 41.0 31.0 41.0 23 36.55303640965012 38.0 35.0 40.0 31.0 41.0 24 36.55504435978222 38.0 35.0 40.0 31.0 41.0 25 36.505008300277446 38.0 35.0 40.0 31.0 41.0 26 36.373215070590135 38.0 35.0 40.0 31.0 41.0 27 36.31390450002685 38.0 35.0 40.0 31.0 41.0 28 36.25178601457106 38.0 35.0 40.0 31.0 41.0 29 36.181419982463794 38.0 35.0 40.0 31.0 41.0 30 36.08035047973771 38.0 35.0 40.0 30.0 41.0 31 35.91666540734379 38.0 35.0 40.0 30.0 41.0 32 35.72406295928443 38.0 35.0 40.0 30.0 41.0 33 35.549301204416395 38.0 34.0 40.0 29.0 41.0 34 35.32228194449312 37.0 34.0 40.0 27.0 41.0 35 35.14567268258601 37.0 34.0 40.0 27.0 41.0 36 34.93605137008434 37.0 34.0 40.0 25.0 41.0 37 34.830173397506286 37.0 34.0 40.0 25.0 41.0 38 34.70791736827027 37.0 34.0 40.0 24.0 41.0 39 34.66096702492527 37.0 34.0 40.0 24.0 41.0 40 34.5086419022699 37.0 34.0 40.0 23.0 41.0 41 34.47130464027791 37.0 34.0 40.0 23.0 41.0 42 34.422855327594895 36.0 34.0 40.0 23.0 41.0 43 34.30195550871232 36.0 33.0 40.0 23.0 41.0 44 34.132310248712514 36.0 33.0 40.0 23.0 41.0 45 34.09625460228922 36.0 33.0 40.0 23.0 41.0 46 34.0140058138918 36.0 33.0 40.0 23.0 41.0 47 33.92317701760405 35.0 33.0 40.0 23.0 41.0 48 33.80305176267155 35.0 33.0 40.0 23.0 41.0 49 33.70028426400509 36.0 33.0 40.0 22.0 41.0 50 33.51038491230451 35.0 33.0 40.0 21.0 41.0 51 33.1246118740107 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 4.0 11 3.0 12 11.0 13 21.0 14 40.0 15 114.0 16 263.0 17 638.0 18 1394.0 19 2870.0 20 5130.0 21 8253.0 22 13101.0 23 19056.0 24 28533.0 25 41879.0 26 55022.0 27 61732.0 28 64263.0 29 69714.0 30 80374.0 31 95767.0 32 119314.0 33 154734.0 34 266966.0 35 419499.0 36 222672.0 37 266469.0 38 400891.0 39 711263.0 40 144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.14729769138787 23.999489411559683 28.884676141276096 14.968536755776354 2 32.45689820094742 25.35614990593662 29.34536324284107 12.84158865027489 3 28.456399187559906 24.097973819159733 33.81677398776967 13.628853005510692 4 25.660220112490222 26.721363078218097 33.018577638219796 14.599839171071885 5 22.592445284564636 31.44793943160703 31.64140357804174 14.318211705786593 6 20.94492943558435 39.41813495675592 28.82172071519679 10.815214892462937 7 85.61150200135879 3.6372031199911774 8.831315147853616 1.9199797307964248 8 85.89171473796814 3.048450920329233 8.644860338949698 2.4149740027529334 9 81.62193498228535 4.861039883452079 10.529504005772093 2.9875211284904815 10 45.62824724441399 26.09457396892806 16.594542298297473 11.68263648836048 11 38.18638857387954 21.534839140526607 25.119922369979204 15.15884991561465 12 35.620488743743444 21.039298268854395 27.316803086166303 16.023409901235862 13 22.969084641609037 32.82144805839743 28.175993533403833 16.033473766589704 14 17.072463367369348 35.692414835745176 30.25017868987765 16.984943107007826 15 15.83631203384288 25.16988801457942 43.415064995529136 15.57873495604856 16 18.462530750253123 22.341298791660947 40.93276276897127 18.26340768911466 17 18.99507963797093 23.376912335373007 29.025120115287528 28.602887911368533 18 21.76257830442839 24.918612909977924 33.97284428306534 19.345964502528346 19 25.259658979652666 27.82266504658798 27.30763950269715 19.610036471062205 20 26.781006753078724 26.12341514216255 27.23224089485447 19.86333720990426 21 21.795406440295075 28.821367033027805 29.83762451621906 19.54560201045806 22 22.0906024396996 24.43496862035338 29.288677637030137 24.18575130291688 23 18.787275287230113 29.889840865531003 28.518968778545766 22.803915068693115 24 19.963879404669314 25.734171838732507 35.74868245353822 18.553266303059964 25 19.10854730836616 26.55172424880319 33.477914316957744 20.86181412587291 26 17.903262782314734 31.60548876142755 29.009107958909848 21.482140497347864 27 18.589116813825243 31.280454848130486 30.402937233954646 19.727491104089626 28 16.41139924061223 28.19110540789682 35.98992584571034 19.407569505780614 29 16.967676986576475 26.284887128766353 35.46052794458894 21.286907940068232 30 19.99300995422388 28.829501722914458 32.28079663371742 18.89669168914424 31 25.535981212403186 27.577916985650468 27.368183459442463 19.517918342503883 32 26.087725396019536 27.576759480370157 27.89951053603105 18.436004587579262 33 24.69261000399661 28.060853910937045 27.289344488683298 19.957191596383055 34 18.75087817674913 28.54022186160931 30.807999776215645 21.900900185425915 35 19.44846802568504 27.579267408477502 31.103903139958145 21.86836142587931 36 25.238759578758106 27.012282738670358 28.650313474936954 19.09864420763458 37 20.320616101477203 30.58315437551465 29.359060388658122 19.73716913435003 38 20.299652394733737 30.935871956765894 26.729240544709125 22.035235103791248 39 19.88741975031968 28.877924027140928 29.336135353523012 21.89852086901638 40 22.59852218728628 26.567511334709693 28.04120847409616 22.792758003907867 41 17.629673548142737 25.41444315797021 29.48391019430977 27.471973099577284 42 21.396034965662285 26.663552120051303 27.425158441573473 24.51525447271294 43 20.94525096482888 27.91047468326958 28.13766724745566 23.00660710444588 44 20.47855126639116 29.54699423208688 28.24029938231017 21.73415511921179 45 18.379061758372703 32.979479682084744 25.565851279220176 23.075607280322377 46 21.67505804406687 30.610387902526483 26.920293221809843 20.79426083159681 47 20.72239904544398 27.74366531120655 28.814261236723652 22.719674406625817 48 21.098556108621583 26.554071412288273 30.43891635641774 21.90845612267241 49 20.89335614476147 25.135162856170002 30.56309095065587 23.40839004841266 50 19.53209778218773 29.335556600882857 28.948821225560163 22.183524391369254 51 18.036054360306313 30.844557651318897 27.00733118830457 24.11205680007022 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1942.0 1 3179.0 2 4416.0 3 26514.0 4 48612.0 5 34403.5 6 20195.0 7 19366.0 8 18537.0 9 19964.5 10 21392.0 11 22532.0 12 23672.0 13 23073.0 14 22474.0 15 21125.5 16 19777.0 17 17799.0 18 15821.0 19 15442.0 20 15063.0 21 15148.0 22 15233.0 23 15061.5 24 14890.0 25 16061.5 26 22728.0 27 28223.0 28 30145.0 29 32067.0 30 39731.0 31 47395.0 32 53913.0 33 60431.0 34 74021.0 35 87611.0 36 90378.5 37 93146.0 38 108866.5 39 124587.0 40 158942.5 41 193298.0 42 229387.5 43 265477.0 44 285526.5 45 305576.0 46 304152.5 47 302729.0 48 281084.0 49 259439.0 50 242409.5 51 225380.0 52 202882.0 53 180384.0 54 166318.5 55 152253.0 56 139555.0 57 126857.0 58 112860.5 59 98864.0 60 90350.5 61 81837.0 62 71599.0 63 61361.0 64 54171.0 65 46981.0 66 36862.0 67 26743.0 68 22748.0 69 18753.0 70 15462.0 71 12171.0 72 10047.5 73 7924.0 74 6538.5 75 3880.0 76 2607.0 77 2113.5 78 1620.0 79 1231.5 80 843.0 81 662.0 82 481.0 83 368.0 84 255.0 85 215.0 86 175.0 87 152.0 88 129.0 89 99.0 90 69.0 91 47.5 92 26.0 93 24.0 94 22.0 95 14.0 96 6.0 97 4.5 98 3.0 99 3.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3110137.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.52137246771024 #Duplication Level Percentage of deduplicated Percentage of total 1 79.15418989071 18.618151827992545 2 8.625940472977625 4.057879174984067 3 3.082677587118443 2.175264231734255 4 1.5838937715383725 1.4902142139856163 5 0.9684554406903653 1.1389700569429273 6 0.6743821873902253 0.951743676911679 7 0.4855454120625653 0.7994486140978012 8 0.38286046416209046 0.7204322864573566 9 0.30192172789332866 0.6391452076086278 >10 2.8004387930299353 14.695074155698107 >50 0.9551318956313807 16.553801107070317 >100 0.9783312488098663 35.511199580327165 >500 0.0044310101232252 0.6765078319371157 >1k 0.0015231597298586623 0.6707429729388551 >5k 1.384690663507875E-4 0.20268202003488858 >10k+ 1.384690663507875E-4 1.0987430412786385 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33735 1.0846789064275946 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6223 0.20008764887205935 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06465953107531919 0.0 2 0.0 0.0 0.0 0.21587473477856442 0.0 3 0.0 0.0 0.0 0.3710769011140024 0.0 4 0.0 0.0 0.0 0.5541878058747894 0.0 5 0.0 0.0 0.0 1.0397934238909734 0.0 6 0.0 0.0 0.0 1.726933572379609 0.0 7 0.0 0.0 0.0 2.212892872564778 0.0 8 0.0 0.0 0.0 3.2015952994996684 0.0 9 0.0 0.0 0.0 3.675465100090446 0.0 10 0.0 0.0 0.0 4.343345646831635 0.0 11 0.0 0.0 0.0 4.929300542066153 0.0 12 0.0 0.0 0.0 5.36722337311829 0.0 13 0.0 0.0 0.0 5.573580842258718 0.0 14 0.0 0.0 0.0 5.666084805910479 0.0 15 0.0 0.0 0.0 5.77878080611883 0.0 16 0.0 0.0 0.0 6.029702228551347 0.0 17 0.0 0.0 0.0 6.315380962317737 0.0 18 0.0 0.0 0.0 6.696296658314409 0.0 19 0.0 0.0 0.0 6.887156417868409 0.0 20 0.0 0.0 0.0 7.0848969032553875 0.0 21 0.0 0.0 0.0 7.360061630725592 0.0 22 0.0 0.0 0.0 7.637927203849863 0.0 23 0.0 0.0 0.0 7.964504457520682 0.0 24 0.0 0.0 0.0 8.204140203470137 0.0 25 0.0 0.0 0.0 8.412941294869004 0.0 26 0.0 0.0 0.0 8.608270310921995 0.0 27 0.0 0.0 0.0 8.820351000615085 0.0 28 0.0 0.0 0.0 9.04140235623061 0.0 29 0.0 0.0 0.0 9.281070255104519 0.0 30 0.0 0.0 0.0 9.570703798578649 0.0 31 0.0 0.0 0.0 9.82898824071094 0.0 32 3.2152924453167174E-5 0.0 0.0 10.063125836578903 0.0 33 3.2152924453167174E-5 0.0 0.0 10.305076593088986 0.0 34 3.2152924453167174E-5 0.0 0.0 10.566029727950891 0.0 35 3.2152924453167174E-5 0.0 0.0 10.85942516358604 0.0 36 3.2152924453167174E-5 0.0 0.0 11.11118256205434 0.0 37 3.2152924453167174E-5 0.0 0.0 11.380045316331724 0.0 38 3.2152924453167174E-5 0.0 0.0 11.666560026133897 0.0 39 3.2152924453167174E-5 0.0 0.0 12.075480919329276 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 20 7.0351444E-4 45.000004 27 ATTACGC 30 2.166702E-6 45.000004 34 GCGTAAT 30 2.166702E-6 45.000004 25 CGTTTTT 15710 0.0 43.28135 1 CTAGCGG 280 0.0 42.589283 2 TACGGGA 890 0.0 40.702248 4 GCGATCG 50 1.0822987E-9 40.5 9 TATTGCG 325 0.0 40.153843 1 CGGTCTA 1050 0.0 40.071426 31 CGAATTA 45 1.9301297E-8 40.0 19 CGACGGT 1045 0.0 39.832535 28 CTCACGA 1075 0.0 39.767445 24 CACGACG 1055 0.0 39.454975 26 GGGCGAT 3885 0.0 39.38224 7 CGGTCGA 40 3.4607547E-7 39.375004 30 TCACGAC 1075 0.0 39.34884 25 TTACGGG 785 0.0 39.267513 3 CGGTTTT 1310 0.0 39.160305 1 ATCGGTA 225 0.0 39.0 27 ACGGGAT 895 0.0 38.966484 5 >>END_MODULE