##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548072_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2604066 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.52459576677396 31.0 31.0 33.0 30.0 34.0 2 31.922994655281393 31.0 31.0 34.0 30.0 34.0 3 32.006632320378976 33.0 31.0 34.0 30.0 34.0 4 35.72064648131038 37.0 35.0 37.0 35.0 37.0 5 35.61801313791586 37.0 35.0 37.0 33.0 37.0 6 35.68132681736945 37.0 35.0 37.0 33.0 37.0 7 36.047311012854514 37.0 35.0 37.0 35.0 37.0 8 36.06790112078573 37.0 35.0 37.0 35.0 37.0 9 37.86093132816142 39.0 38.0 39.0 35.0 39.0 10 37.32102450552328 39.0 37.0 39.0 34.0 39.0 11 36.96318987306773 39.0 37.0 39.0 33.0 39.0 12 36.08246334770317 37.0 35.0 39.0 32.0 39.0 13 35.68500337549048 37.0 35.0 39.0 31.0 39.0 14 36.67647594185401 38.0 35.0 41.0 31.0 41.0 15 36.93914785569951 38.0 35.0 41.0 32.0 41.0 16 37.11190192568084 38.0 35.0 41.0 32.0 41.0 17 37.0445445699149 38.0 35.0 41.0 32.0 41.0 18 37.00982809191472 38.0 35.0 41.0 32.0 41.0 19 36.964977078153936 38.0 35.0 41.0 32.0 41.0 20 36.84135809153839 38.0 35.0 41.0 32.0 41.0 21 36.68061677392201 38.0 35.0 41.0 32.0 41.0 22 36.574278839322815 38.0 35.0 41.0 31.0 41.0 23 36.528113726764225 38.0 35.0 40.0 31.0 41.0 24 36.53548565973366 38.0 35.0 40.0 31.0 41.0 25 36.50823135819138 38.0 35.0 40.0 31.0 41.0 26 36.370210662863386 38.0 35.0 40.0 31.0 41.0 27 36.295267477859625 38.0 35.0 40.0 31.0 41.0 28 36.25509722103818 38.0 35.0 40.0 31.0 41.0 29 36.224366049093994 38.0 35.0 40.0 31.0 41.0 30 36.169266831178625 37.0 35.0 40.0 31.0 41.0 31 36.05233815118357 38.0 35.0 40.0 30.0 41.0 32 35.90343601122245 37.0 35.0 40.0 30.0 41.0 33 35.81160615744762 37.0 35.0 40.0 30.0 41.0 34 35.71527257757676 37.0 35.0 40.0 30.0 41.0 35 35.59009141857388 37.0 35.0 40.0 29.0 41.0 36 35.41883270239694 37.0 34.0 40.0 29.0 41.0 37 35.30674875367982 37.0 34.0 40.0 28.0 41.0 38 35.23870746747586 37.0 34.0 40.0 28.0 41.0 39 35.23124490700312 37.0 34.0 40.0 27.0 41.0 40 35.084924498841424 37.0 34.0 40.0 27.0 41.0 41 35.08320219226395 37.0 34.0 40.0 27.0 41.0 42 35.0421694381018 36.0 34.0 40.0 27.0 41.0 43 34.89667888601902 36.0 34.0 40.0 27.0 41.0 44 34.73283012028113 36.0 34.0 40.0 26.0 41.0 45 34.69113263642319 36.0 34.0 40.0 26.0 41.0 46 34.62056414852773 36.0 34.0 40.0 26.0 41.0 47 34.53859080376611 35.0 34.0 40.0 26.0 41.0 48 34.43984100249379 35.0 34.0 40.0 26.0 41.0 49 34.368431906103766 36.0 34.0 40.0 25.0 41.0 50 34.175365754938625 35.0 33.0 40.0 24.0 41.0 51 33.801896342105 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 6.0 12 9.0 13 17.0 14 50.0 15 70.0 16 181.0 17 458.0 18 1031.0 19 2107.0 20 3732.0 21 6037.0 22 9099.0 23 13358.0 24 19267.0 25 26460.0 26 34468.0 27 41329.0 28 46998.0 29 54045.0 30 64497.0 31 79246.0 32 99367.0 33 130339.0 34 242751.0 35 402440.0 36 164693.0 37 211560.0 38 329187.0 39 621124.0 40 135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.77087984713137 24.278493709452835 29.60232190735565 12.348304536060146 2 29.44748712206219 26.736303918564275 30.30188174954091 13.514327209832624 3 29.685729931576233 25.454462367697282 30.869801303039168 13.99000639768731 4 26.623787569132272 28.075210075320673 29.753623756079918 15.547378599467141 5 23.767561958875085 32.84144871904168 28.736560440480385 14.654428881602847 6 22.37109197693146 41.54445394241159 25.01699265686814 11.067461423788798 7 88.3375843776617 4.352347444342809 5.48158149601431 1.828486681981179 8 89.24489625070947 3.351796767055827 5.20931497127953 2.1939920109551756 9 84.39106382096307 5.850504557104159 6.95447043200902 2.8039611899237578 10 49.97814955534921 28.671316318403605 11.705694095310948 9.644840030936235 11 43.66198859783124 19.893428200360514 22.09483169781411 14.349751503994138 12 39.94987070220186 19.856101957477268 24.81442482640609 15.379602513914778 13 23.111779808960296 36.83839042482026 24.48363443937289 15.566195326846554 14 16.702572054625346 39.891078029512315 27.117822666553 16.288527249309347 15 14.615796988248379 25.80687279047459 44.89026007789357 14.687070143383462 16 17.898586287751538 20.95688050917296 43.376934378775346 17.76759882430015 17 17.67962102343028 20.740680151731947 28.66171594729166 32.917982877546116 18 21.688121576027644 24.555944434588064 33.16736211755001 20.588571871834276 19 26.854119672850075 25.29905156013711 26.944324759817917 20.902504007194903 20 29.976160358454816 23.548097475256004 26.078140876613727 20.397601289675453 21 22.9956537199902 27.627448766659523 28.445745998757328 20.931151514592948 22 22.915049004134303 24.03172577039138 27.106417425672007 25.946807799802308 23 19.558452051522504 29.42947682585618 25.934596127747916 25.0774749948734 24 20.163390636028428 24.772989624686932 35.968443196140186 19.09517654314445 25 17.665719686060186 25.68863461985987 34.09491157290176 22.550734121178188 26 17.289999562223077 34.47397262588582 27.35591187012925 20.880115941761844 27 18.549184237265877 33.63778030203535 28.682567953346805 19.130467507351963 28 16.235648405224754 28.78605995393358 36.996297328869545 17.981994311972123 29 17.653815225881374 24.79242077581751 35.83906859503561 21.71469540326551 30 19.663288104064954 29.40102132588037 30.91572947843872 20.019961091615958 31 28.067760187337804 27.031649735452174 24.08456621299153 20.816023864218494 32 28.509991682238468 28.092490743322173 26.295186066712596 17.102331507726763 33 26.819942351691545 28.476159974439973 25.573622173938755 19.130275499929724 34 20.548787933946375 28.39478722889512 28.41871135370609 22.637713483452416 35 20.86321928860482 26.67497674790117 30.779519413102435 21.682284550391582 36 29.06220502859759 25.22317022686829 27.542735091967714 18.17188965256641 37 21.416546278012923 31.062960769811514 29.475212993833487 18.04527995834207 38 20.1932669909288 32.36676796978264 24.746953418231335 22.693011621057224 39 20.641066701074397 30.192859935193656 28.48007692585365 20.685996437878305 40 22.884174210638285 27.24723566914203 26.766257076433547 23.102333043786142 41 17.493220217920744 25.06468730055229 29.435621063367822 28.00647141815914 42 23.263312066591247 25.369364678161 25.96205318912808 25.405270066119677 43 23.378631724387937 26.09058295757481 26.905270450134523 23.625514867902734 44 20.146647588809195 30.404068099656463 27.852059049194605 21.59722526233974 45 18.612969102933643 34.96163307688822 24.07630989383526 22.349087926342882 46 23.002297176799665 31.924190861521947 25.454193557306155 19.61931840437224 47 21.930396541408705 27.89168938114472 27.259677750103105 22.918236327343468 48 22.904104581066687 25.19767164119496 30.232797479019347 21.665426298719005 49 21.08556388355748 23.908341800860654 31.726192807709175 23.279901507872687 50 19.864281473664647 30.75812978626502 28.38468763848535 20.992901101584984 51 18.96272982328405 31.776690759758008 25.246902344257023 24.013677072700922 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1527.0 1 2800.5 2 4074.0 3 9644.0 4 15214.0 5 11531.0 6 7848.0 7 7579.5 8 7311.0 9 7637.0 10 7963.0 11 8008.5 12 8054.0 13 7717.5 14 7381.0 15 7588.0 16 7795.0 17 7343.5 18 6892.0 19 7036.5 20 7181.0 21 7341.5 22 7502.0 23 9413.5 24 11325.0 25 13275.0 26 18792.0 27 22359.0 28 27644.0 29 32929.0 30 38974.5 31 45020.0 32 52606.0 33 60192.0 34 66734.5 35 73277.0 36 75672.0 37 78067.0 38 95008.5 39 111950.0 40 150923.0 41 189896.0 42 225442.0 43 260988.0 44 266952.5 45 272917.0 46 264507.5 47 256098.0 48 239690.5 49 223283.0 50 202438.5 51 181594.0 52 162846.0 53 144098.0 54 131269.5 55 118441.0 56 108105.5 57 97770.0 58 93678.5 59 89587.0 60 80577.0 61 71567.0 62 64173.5 63 56780.0 64 47543.5 65 38307.0 66 30947.0 67 23587.0 68 19635.0 69 15683.0 70 12361.5 71 9040.0 72 7853.0 73 6666.0 74 5477.5 75 3034.5 76 1780.0 77 1539.5 78 1299.0 79 968.5 80 638.0 81 482.0 82 326.0 83 240.0 84 154.0 85 113.5 86 73.0 87 58.0 88 43.0 89 36.5 90 30.0 91 25.5 92 21.0 93 17.5 94 14.0 95 10.0 96 6.0 97 5.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2604066.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.405165337621433 #Duplication Level Percentage of deduplicated Percentage of total 1 80.76326085448036 14.8646116923216 2 8.582652276275123 3.1593026836031317 3 2.714079930249895 1.4985926956730806 4 1.2138007526501111 0.8936081415781851 5 0.665153391902604 0.6121129076423566 6 0.4374454710519908 0.4830753732543348 7 0.3175060875913513 0.4090626426474093 8 0.2302520155758592 0.3390261132795419 9 0.1800211668048548 0.29819874053833917 >10 1.9817467467201608 9.055883610089117 >50 1.2127147043750388 16.667772633807093 >100 1.692773841880057 49.92531842233897 >500 0.007335283304601614 0.9189740567177869 >1k 8.383180919544702E-4 0.2121154440014737 >5k 4.191590459772351E-4 0.6623448425076024 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8790 0.33754904829601096 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 8381 0.3218428411568678 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.840148444778281E-5 0.0 0.0 0.047041818448533945 0.0 2 3.840148444778281E-5 0.0 0.0 0.18079418878016149 0.0 3 3.840148444778281E-5 0.0 0.0 0.2670823243343295 0.0 4 3.840148444778281E-5 0.0 0.0 0.4135455860181731 0.0 5 3.840148444778281E-5 0.0 0.0 0.7299354163834557 0.0 6 3.840148444778281E-5 0.0 0.0 1.0446739829174836 0.0 7 3.840148444778281E-5 0.0 0.0 1.2321116285071116 0.0 8 3.840148444778281E-5 0.0 0.0 1.7606696604463943 0.0 9 3.840148444778281E-5 0.0 0.0 1.9468016555647976 0.0 10 3.840148444778281E-5 0.0 0.0 2.284734718705286 0.0 11 3.840148444778281E-5 0.0 0.0 2.6526593411994934 0.0 12 3.840148444778281E-5 0.0 0.0 2.9596024063906214 0.0 13 3.840148444778281E-5 0.0 0.0 3.0928555574244276 0.0 14 3.840148444778281E-5 0.0 0.0 3.1422398664242763 0.0 15 3.840148444778281E-5 0.0 0.0 3.2355554736323886 0.0 16 3.840148444778281E-5 0.0 0.0 3.4402353857390713 0.0 17 3.840148444778281E-5 0.0 0.0 3.677863771501951 0.0 18 3.840148444778281E-5 0.0 0.0 4.011342262446497 0.0 19 3.840148444778281E-5 0.0 0.0 4.160340022103894 0.0 20 3.840148444778281E-5 0.0 0.0 4.321357446393447 0.0 21 3.840148444778281E-5 0.0 0.0 4.525192525842279 0.0 22 3.840148444778281E-5 0.0 0.0 4.7353254487405465 0.0 23 3.840148444778281E-5 0.0 0.0 4.970419336529873 0.0 24 3.840148444778281E-5 0.0 0.0 5.1491782466343015 0.0 25 3.840148444778281E-5 0.0 0.0 5.2938366385491 0.0 26 3.840148444778281E-5 0.0 0.0 5.449746665407098 0.0 27 3.840148444778281E-5 0.0 0.0 5.586916767854579 0.0 28 3.840148444778281E-5 0.0 0.0 5.739101850721141 0.0 29 3.840148444778281E-5 0.0 0.0 5.897200762192663 0.0 30 3.840148444778281E-5 0.0 0.0 6.094469187800923 0.0 31 3.840148444778281E-5 0.0 0.0 6.282367651203925 0.0 32 7.680296889556563E-5 0.0 0.0 6.4487996848006155 0.0 33 7.680296889556563E-5 0.0 0.0 6.619532684655458 0.0 34 1.5360593779113125E-4 0.0 0.0 6.795104271550721 0.0 35 1.5360593779113125E-4 0.0 0.0 7.02029057635252 0.0 36 1.9200742223891406E-4 0.0 0.0 7.219402273214273 0.0 37 1.9200742223891406E-4 0.0 0.0 7.415403449835757 0.0 38 2.304089066866969E-4 0.0 0.0 7.608178901763627 0.0 39 2.304089066866969E-4 0.0 0.0 7.796614985948897 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGT 20 7.0349325E-4 45.000004 43 CTACCGT 40 6.8212103E-9 45.000004 16 ACGTATA 35 1.2127202E-7 45.000004 44 ACCGTAC 30 2.1665637E-6 45.000004 16 ATACGTA 30 2.1665637E-6 45.000004 45 TCGGTCG 20 7.0349325E-4 45.000004 1 TACACCG 60 0.0 45.000004 32 ACGCGTC 20 7.0349325E-4 45.000004 14 CGAACTA 50 2.1827873E-11 44.999996 14 CGATAAT 25 3.892172E-5 44.999996 13 TGCGTAG 90 0.0 42.5 1 TAGTCCG 75 0.0 42.000004 1 TTGTGCG 245 0.0 41.32653 1 TACGACG 60 3.6379788E-12 41.250004 1 ACGAATC 60 3.6379788E-12 41.250004 18 TCACGAC 510 0.0 41.02941 25 CACGACG 510 0.0 41.02941 26 CGACGGT 505 0.0 40.9901 28 AATCGTC 55 6.184564E-11 40.90909 39 CGGTCTA 515 0.0 40.631065 31 >>END_MODULE