##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548070_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 676761 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.521368695891162 31.0 31.0 33.0 30.0 34.0 2 31.920171227360914 31.0 31.0 34.0 30.0 34.0 3 31.889121861336573 33.0 31.0 34.0 30.0 34.0 4 35.67096803746079 37.0 35.0 37.0 33.0 37.0 5 35.627729730288834 37.0 35.0 37.0 33.0 37.0 6 35.715704657922075 37.0 35.0 37.0 33.0 37.0 7 36.066700061025976 37.0 35.0 37.0 35.0 37.0 8 36.09728101944409 37.0 35.0 37.0 35.0 37.0 9 37.91717755603529 39.0 38.0 39.0 35.0 39.0 10 37.37376562774746 39.0 37.0 39.0 35.0 39.0 11 37.05588383491366 39.0 37.0 39.0 33.0 39.0 12 36.57821151041505 39.0 35.0 39.0 33.0 39.0 13 36.40774512715715 39.0 35.0 39.0 32.0 39.0 14 37.491570879527636 40.0 35.0 41.0 32.0 41.0 15 37.65357046283695 40.0 35.0 41.0 33.0 41.0 16 37.739049679281166 40.0 35.0 41.0 33.0 41.0 17 37.6750566300363 40.0 35.0 41.0 33.0 41.0 18 37.5439734263647 39.0 36.0 41.0 33.0 41.0 19 37.460302824778616 39.0 36.0 41.0 32.0 41.0 20 37.312797279985105 39.0 35.0 41.0 32.0 41.0 21 37.191166453149634 39.0 35.0 41.0 32.0 41.0 22 37.11178096846597 39.0 35.0 41.0 32.0 41.0 23 37.01815559702761 39.0 35.0 41.0 32.0 41.0 24 37.01595097826264 39.0 35.0 41.0 32.0 41.0 25 36.99548585098728 39.0 35.0 41.0 32.0 41.0 26 36.87359200663159 39.0 35.0 41.0 32.0 41.0 27 36.81414709180937 39.0 35.0 41.0 31.0 41.0 28 36.739049679281166 38.0 35.0 41.0 31.0 41.0 29 36.66647900809887 38.0 35.0 41.0 31.0 41.0 30 36.57483070094169 38.0 35.0 41.0 31.0 41.0 31 36.46773676379106 38.0 35.0 41.0 30.0 41.0 32 36.29279021693035 38.0 35.0 41.0 30.0 41.0 33 36.114405233162074 38.0 35.0 41.0 30.0 41.0 34 35.930427433022885 38.0 35.0 41.0 29.0 41.0 35 35.75256405141549 38.0 35.0 41.0 28.0 41.0 36 35.572651201827526 38.0 35.0 41.0 27.0 41.0 37 35.47654785071835 38.0 35.0 40.0 26.0 41.0 38 35.366773499063925 38.0 34.0 40.0 26.0 41.0 39 35.32113700405313 38.0 35.0 40.0 26.0 41.0 40 35.190745329591984 38.0 34.0 40.0 25.0 41.0 41 35.12235190857629 38.0 34.0 40.0 24.0 41.0 42 35.06869337919886 38.0 34.0 40.0 24.0 41.0 43 34.95869738356672 38.0 34.0 40.0 24.0 41.0 44 34.793275617241534 38.0 34.0 40.0 24.0 41.0 45 34.76458158788701 38.0 34.0 40.0 24.0 41.0 46 34.68919899344082 37.0 34.0 40.0 23.0 41.0 47 34.62296734002107 37.0 34.0 40.0 23.0 41.0 48 34.510007225593675 37.0 34.0 40.0 23.0 41.0 49 34.406412308037844 37.0 34.0 40.0 23.0 41.0 50 34.250918714287614 37.0 33.0 40.0 23.0 41.0 51 33.8814322929365 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 3.0 14 6.0 15 17.0 16 51.0 17 133.0 18 253.0 19 508.0 20 928.0 21 1545.0 22 2359.0 23 3545.0 24 5495.0 25 8176.0 26 10805.0 27 12587.0 28 12882.0 29 13708.0 30 15569.0 31 18376.0 32 22989.0 33 28894.0 34 48190.0 35 72100.0 36 46482.0 37 61571.0 38 98794.0 39 190770.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.884372769707475 24.0550209010271 28.701860775074213 15.358745554191215 2 32.432867733217485 25.096156545663835 29.752453229426635 12.718522491692044 3 28.838245702692678 25.11817318078317 33.033522912815606 13.010058203708546 4 25.05832930680107 27.49862950140448 32.6261412817819 14.816899910012546 5 22.883115309540592 31.672628889667102 31.22756778242245 14.216688018369853 6 20.79035287198878 41.10963841001476 27.597926003419225 10.502082714577229 7 87.70570408164772 3.128874152027082 7.709516358064368 1.4559054082608187 8 88.69009886799032 2.183193180458094 7.595739116172474 1.5309688353791073 9 83.84082416096672 5.116281818840034 8.800152491056666 2.2427415291365786 10 39.733672596381886 37.249634656843405 14.039520598852476 8.977172147922236 11 31.19683315084646 21.937286575319796 29.985622693979114 16.880257579854632 12 30.32414692927045 21.79912849587964 30.776743931757295 17.099980643092614 13 23.92587634334721 28.776185388933463 30.23371618636417 17.064222081355158 14 17.79742035962474 33.004118145105885 31.305438699925087 17.893022795344294 15 16.882030731676323 27.34983251103418 39.8072583969821 15.960878360307406 16 20.956881380576007 24.898154592241575 37.736364831897816 16.408599195284598 17 20.81828001318043 24.133926157092386 30.433491291608117 24.61430253811907 18 21.874191922997927 25.764191494486237 33.449327015002346 18.912289567513493 19 23.982026151034116 26.767499900260212 29.630253516381703 19.62022043232397 20 25.400399845735794 26.642344934179125 29.2015940634877 18.75566115659738 21 23.286064061020063 26.078630417532928 32.19142356016378 18.44388196128323 22 23.11820568856657 23.15086123461606 31.502997365391916 22.227935711425452 23 19.3332653625135 27.87069585865616 31.28179667563586 21.51424210319448 24 19.268840846325364 26.40296943825073 35.283652574542565 19.044537140881346 25 19.548555546197257 27.448981250397114 32.885021447748905 20.117441755656724 26 19.477924998633195 31.06222137504969 28.859523524552984 20.60033010176414 27 18.887169916706192 29.730584356959106 31.925450786910005 19.4567949394247 28 17.19218453782059 27.928914343468374 35.940900849783006 18.938000268928025 29 18.343551120705833 26.1225159251198 34.974680869612754 20.55925208456161 30 19.931704102334503 27.382340294431863 33.15454052464607 19.531415078587568 31 23.736592386381602 26.81803472717843 29.019993764416093 20.425379122023877 32 23.5994686455041 27.783515894089643 29.510713531069317 19.106301929336944 33 22.245371704338755 28.0664813723013 29.271042509837297 20.417104413522647 34 19.5127969844598 28.256504142525944 30.95967409469517 21.27102477831908 35 19.4163079728294 28.32935112986712 30.834075840658663 21.420265056644812 36 23.7481178732226 26.979096017648775 29.879676872633027 19.3931092364956 37 20.445474842669718 29.572773844828532 30.02743952444068 19.954311788061073 38 20.5744716376978 30.251595467232896 28.172574956299197 21.001357938770113 39 19.954164025409266 29.319065371674785 29.20558365508651 21.52118694782944 40 21.72465611936858 27.873946636995928 28.973744054400296 21.427653189235198 41 19.402122758255867 26.85822616847011 29.80638659733643 23.93326447593759 42 21.28757419532154 28.21646046388607 27.995555299433626 22.500410041358766 43 21.37623178640613 28.37456650132026 27.92448146391414 22.324720248359466 44 20.534427959057926 29.834461501179888 28.70895338236098 20.92215715740121 45 19.588303699533512 31.24795902837191 27.536900028222668 21.626837243871915 46 21.737659232727655 30.025223084663565 28.447856776616852 19.789260905991924 47 21.045391209008795 28.60684938996189 29.081610790219887 21.26614861080943 48 21.568027708452465 27.584479602104732 29.99921685794542 20.848275831497382 49 20.623085550142516 26.66672577172739 30.239478929784664 22.470709748345428 50 19.54249727747314 29.18578345974428 29.899329305323448 21.37238995745913 51 19.58859922483713 30.412361232399622 28.416087806478206 21.58295173628504 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 328.0 1 633.5 2 939.0 3 5450.0 4 9961.0 5 7237.5 6 4514.0 7 4214.0 8 3914.0 9 3997.0 10 4080.0 11 4148.5 12 4217.0 13 4009.0 14 3801.0 15 3616.0 16 3431.0 17 3272.0 18 3113.0 19 3174.5 20 3236.0 21 3408.5 22 3581.0 23 4025.0 24 4469.0 25 5127.5 26 6604.5 27 7423.0 28 9078.5 29 10734.0 30 12685.0 31 14636.0 32 17032.5 33 19429.0 34 21860.0 35 24291.0 36 25177.0 37 26063.0 38 29232.5 39 32402.0 40 37846.5 41 43291.0 42 49050.0 43 54809.0 44 56550.0 45 58291.0 46 58485.5 47 58680.0 48 55875.5 49 53071.0 50 49851.5 51 46632.0 52 42859.0 53 39086.0 54 35998.0 55 32910.0 56 29475.0 57 26040.0 58 23388.0 59 20736.0 60 18841.5 61 16947.0 62 15008.5 63 13070.0 64 10784.5 65 8499.0 66 6865.0 67 5231.0 68 4409.0 69 3587.0 70 2934.0 71 2281.0 72 1852.5 73 1424.0 74 1170.0 75 654.5 76 393.0 77 307.0 78 221.0 79 192.5 80 164.0 81 106.0 82 48.0 83 46.5 84 45.0 85 30.0 86 15.0 87 13.0 88 11.0 89 10.0 90 9.0 91 5.5 92 2.0 93 3.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 676761.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.57838959211079 #Duplication Level Percentage of deduplicated Percentage of total 1 73.78798299356481 22.5631769119327 2 6.195737674185076 3.7891136082349925 3 2.902227287182979 2.662363100170078 4 2.036436738803955 2.4908382391533954 5 1.6042075759389354 2.4527042121838205 6 1.309497365405461 2.4025392365526503 7 1.1164091859043177 2.3896596521555424 8 1.0143391505195873 2.481348617849492 9 0.9037623369344358 2.487203715371191 >10 8.980161446195565 51.94057500217374 >50 0.13373297311971155 2.4946449259946823 >100 0.014051652972186206 0.7630469423561221 >500 9.690795153231865E-4 0.18653904862647724 >1k 0.0 0.0 >5k 4.8453975766159327E-4 0.8962467872450841 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6049 0.8938162807845015 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 727 0.10742344786416475 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.477626518076544E-4 0.0 0.0 0.03191673279045335 0.0 2 1.477626518076544E-4 0.0 0.0 0.09988755262197438 0.0 3 1.477626518076544E-4 0.0 0.0 0.16830166040891836 0.0 4 1.477626518076544E-4 0.0 0.0 0.24247851161636086 0.0 5 1.477626518076544E-4 0.0 0.0 0.44210585420850196 0.0 6 1.477626518076544E-4 0.0 0.0 0.7541805748262681 0.0 7 1.477626518076544E-4 0.0 0.0 0.9613438126605995 0.0 8 1.477626518076544E-4 0.0 0.0 1.3997556005739102 0.0 9 1.477626518076544E-4 0.0 0.0 1.6119427685697019 0.0 10 1.477626518076544E-4 0.0 0.0 1.8965336359512441 0.0 11 1.477626518076544E-4 0.0 0.0 2.1468435681134106 0.0 12 1.477626518076544E-4 0.0 0.0 2.34972168904532 0.0 13 1.477626518076544E-4 0.0 0.0 2.4410390078624506 0.0 14 1.477626518076544E-4 0.0 0.0 2.486254379315593 0.0 15 1.477626518076544E-4 0.0 0.0 2.541369848439848 0.0 16 1.477626518076544E-4 0.0 0.0 2.6570680048052413 0.0 17 1.477626518076544E-4 0.0 0.0 2.8049784192647036 0.0 18 1.477626518076544E-4 0.0 0.0 2.979633873701351 0.0 19 1.477626518076544E-4 0.0 0.0 3.0777482745016336 0.0 20 1.477626518076544E-4 0.0 0.0 3.19388971882245 0.0 21 1.477626518076544E-4 0.0 0.0 3.331013459699953 0.0 22 1.477626518076544E-4 0.0 0.0 3.486607532053413 0.0 23 1.477626518076544E-4 0.0 0.0 3.653579328596063 0.0 24 1.477626518076544E-4 0.0 0.0 3.783462699534991 0.0 25 1.477626518076544E-4 0.0 0.0 3.8931025871762706 0.0 26 1.477626518076544E-4 0.0 0.0 3.9965364434416286 0.0 27 1.477626518076544E-4 0.0 0.0 4.111939074503407 0.0 28 1.477626518076544E-4 0.0 0.0 4.2433000719604115 0.0 29 1.477626518076544E-4 0.0 0.0 4.3793894742752615 0.0 30 1.477626518076544E-4 0.0 0.0 4.546065745514295 0.0 31 1.477626518076544E-4 0.0 0.0 4.688508941856874 0.0 32 1.477626518076544E-4 0.0 0.0 4.824893869475339 0.0 33 1.477626518076544E-4 0.0 0.0 4.9660072019516495 0.0 34 1.477626518076544E-4 0.0 0.0 5.111257888678574 0.0 35 1.477626518076544E-4 0.0 0.0 5.29418805161645 0.0 36 1.477626518076544E-4 0.0 0.0 5.4447581938084495 0.0 37 1.477626518076544E-4 0.0 0.0 5.607740398752292 0.0 38 1.477626518076544E-4 0.0 0.0 5.781657039929901 0.0 39 1.477626518076544E-4 0.0 0.0 6.000789052560653 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGCT 25 3.8890983E-5 45.000004 12 TAACGCC 25 3.8890983E-5 45.000004 12 TAGCGTC 20 7.031228E-4 45.0 20 ACGGGCC 20 7.031228E-4 45.0 5 AGACGCG 20 7.031228E-4 45.0 1 ACGTGGT 20 7.031228E-4 45.0 41 TATAGCG 20 7.031228E-4 45.0 1 CGACGGT 120 0.0 44.999996 28 CGGTCTA 120 0.0 44.999996 31 TCACGAC 130 0.0 43.26923 25 CTCACGA 130 0.0 43.26923 24 CGTTTTT 3350 0.0 42.985073 1 CGTAAGG 130 0.0 41.53846 2 ACGGTCT 130 0.0 41.53846 30 ACGGGAT 375 0.0 41.399998 5 TCTCACG 140 0.0 40.178574 23 TACGGGA 260 0.0 39.80769 4 TTACGGG 215 0.0 39.767445 3 TTAGCGG 200 0.0 39.375004 2 ATTAGCG 80 0.0 39.375 1 >>END_MODULE