##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548069_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2236380 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53034904622649 31.0 31.0 33.0 30.0 34.0 2 31.933784508893837 31.0 31.0 34.0 30.0 34.0 3 32.022750605889875 33.0 31.0 34.0 30.0 34.0 4 35.73481742816516 37.0 35.0 37.0 35.0 37.0 5 35.645191335998355 37.0 35.0 37.0 33.0 37.0 6 35.71074414902655 37.0 35.0 37.0 33.0 37.0 7 36.03423881451274 37.0 35.0 37.0 35.0 37.0 8 36.042192740053125 37.0 35.0 37.0 35.0 37.0 9 37.80133921784312 39.0 38.0 39.0 35.0 39.0 10 37.336758064371885 39.0 37.0 39.0 34.0 39.0 11 36.99947370303794 39.0 37.0 39.0 33.0 39.0 12 36.28296219783758 38.0 35.0 39.0 32.0 39.0 13 35.975134368935514 38.0 35.0 39.0 32.0 39.0 14 37.021774027669714 39.0 35.0 41.0 32.0 41.0 15 37.21843425535911 39.0 35.0 41.0 32.0 41.0 16 37.37100045609422 39.0 35.0 41.0 33.0 41.0 17 37.30196388806911 39.0 35.0 41.0 32.0 41.0 18 37.21527110777238 39.0 35.0 41.0 32.0 41.0 19 37.15614609323997 39.0 35.0 41.0 32.0 41.0 20 37.04155599674474 39.0 35.0 41.0 32.0 41.0 21 36.90679088526994 38.0 35.0 41.0 32.0 41.0 22 36.79539389549182 38.0 35.0 41.0 31.0 41.0 23 36.72521530330266 38.0 35.0 41.0 31.0 41.0 24 36.73618794659226 38.0 35.0 41.0 31.0 41.0 25 36.70523971775816 38.0 35.0 41.0 31.0 41.0 26 36.55999651222064 38.0 35.0 41.0 31.0 41.0 27 36.47977222117887 38.0 35.0 40.0 31.0 41.0 28 36.40149929797261 38.0 35.0 40.0 31.0 41.0 29 36.37587485132222 38.0 35.0 40.0 31.0 41.0 30 36.31830234575519 38.0 35.0 40.0 31.0 41.0 31 36.22263747663635 38.0 35.0 40.0 30.0 41.0 32 36.06743084806696 38.0 35.0 40.0 30.0 41.0 33 35.97666049598011 38.0 35.0 40.0 30.0 41.0 34 35.834046092345666 38.0 35.0 40.0 30.0 41.0 35 35.72359616880852 38.0 35.0 40.0 29.0 41.0 36 35.537091192015666 38.0 35.0 40.0 28.0 41.0 37 35.422327600854956 38.0 34.0 40.0 27.0 41.0 38 35.33449726790617 38.0 34.0 40.0 27.0 41.0 39 35.30608841073521 37.0 34.0 40.0 27.0 41.0 40 35.1204321269194 37.0 34.0 40.0 26.0 41.0 41 35.07311056260564 37.0 34.0 40.0 26.0 41.0 42 35.00973001010562 37.0 34.0 40.0 26.0 41.0 43 34.89443833337805 37.0 34.0 40.0 26.0 41.0 44 34.68556998363427 37.0 34.0 40.0 25.0 41.0 45 34.643024441284574 36.0 34.0 40.0 25.0 41.0 46 34.54031917652635 36.0 34.0 40.0 24.0 41.0 47 34.464764485463114 36.0 33.0 40.0 24.0 41.0 48 34.35733104391919 36.0 33.0 40.0 24.0 41.0 49 34.23733086505871 36.0 33.0 40.0 24.0 41.0 50 34.0820111072358 35.0 33.0 40.0 24.0 41.0 51 33.70612641858718 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 10.0 12 7.0 13 21.0 14 37.0 15 87.0 16 197.0 17 453.0 18 971.0 19 1792.0 20 3347.0 21 5208.0 22 8160.0 23 11818.0 24 16844.0 25 23404.0 26 30170.0 27 35869.0 28 40404.0 29 46347.0 30 54837.0 31 66943.0 32 82316.0 33 109066.0 34 193311.0 35 300499.0 36 150187.0 37 193882.0 38 300686.0 39 559362.0 40 140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.58942576842934 23.447491034618444 29.11025854282367 12.852824654128547 2 30.52558152013522 26.44358293313301 29.493243545372433 13.53759200135934 3 30.069442581314448 25.294940931326522 30.49414679079584 14.141469696563197 4 27.499396345880395 27.650086300181542 29.35203319650507 15.498484157432996 5 23.844471869718024 32.80466646992014 28.058603636233553 15.292258024128277 6 22.52931076114077 41.20708466360815 25.092381437859395 11.171223137391678 7 87.4234700721702 4.481975335139824 5.89041218397589 2.2041424087140826 8 87.55698942040262 4.1739328736619 5.7610513419007505 2.5080263640347344 9 81.89994544755363 6.861848165338627 7.532843255618454 3.705363131489282 10 46.87830332948783 29.386329693522566 12.341641402623884 11.393725574365716 11 40.54498788220249 21.61671987765943 22.385015068995433 15.453277171142652 12 38.094107441490266 20.74307586367254 25.31980253803021 15.843014156806984 13 23.567416986379776 34.37349645409098 25.031613589819262 17.02747296970998 14 17.372628980763555 37.489246013647055 26.811454225131687 18.326670780457704 15 15.86358311199349 25.79275436195995 42.08640749783132 16.25725502821524 16 18.49471020130747 21.7661578086014 40.59260948497125 19.146522505119883 17 19.130648637530296 21.34368935511854 28.223870719645138 31.301791287706028 18 21.80040959049893 25.73672631663671 31.242051887425216 21.220812205439145 19 27.580867294466948 25.787790983643212 25.807733927150128 20.82360779473971 20 29.549718741895386 24.02445022759996 26.013065758055433 20.412765272449228 21 23.837630456362515 26.98101396006046 27.63980182258829 21.54155376098874 22 23.034815192409162 24.881549647197705 26.156735438521185 25.926899721871955 23 21.38111591053399 28.93390210965936 26.272860605085 23.412121374721647 24 21.06766291953961 24.5461862474177 34.027177849918175 20.358972983124513 25 20.393448340621898 26.47296076695374 30.9426841592216 22.190906733202766 26 19.420715620780012 32.24577218540677 26.55438700042032 21.779125193392893 27 20.495801250234756 30.891306486375303 28.681529972544915 19.931362290845026 28 17.511871864352212 28.46323075684812 35.19218558563393 18.83271179316574 29 18.98738139314428 25.698271313461934 33.54014076319767 21.77420653019612 30 20.354948622327154 28.417889625197862 30.24883964263676 20.97832210983822 31 27.047550058576807 27.559940618320677 24.60118584498162 20.79132347812089 32 27.296657991933394 27.559269891521122 26.351693361593288 18.7923787549522 33 25.598780171527203 28.334048775252864 25.959273468730714 20.10789758448922 34 20.62780028438816 28.149688335613803 28.917536375750096 22.304975004247936 35 21.925164775217095 25.94957028769708 29.741591321689516 22.38367361539631 36 26.83586868063567 26.446757706650924 26.659735823071212 20.05763778964219 37 22.102504941020758 30.15297042541965 28.397141809531472 19.347382824028116 38 21.52147667212191 29.621531224568276 25.955204392813386 22.90178771049643 39 22.413766891136568 28.42406031175382 27.16228905642154 21.999883740688077 40 23.87966266913494 26.484318407426287 27.31217413856321 22.323844784875558 41 18.815496471977035 25.751348160867117 28.62912385193929 26.804031515216554 42 22.649996869941603 26.57146817624912 25.65981631028716 25.11871864352212 43 23.417889625197866 26.867705846054786 26.49920854237652 23.215195986370833 44 21.65141881075667 29.59886065874315 27.17243938865488 21.577281141845305 45 20.247185183197846 32.787093427771666 23.862536778186175 23.10318461084431 46 21.945510154803745 30.88433092765988 26.090735921444473 21.0794229960919 47 23.12004221107325 27.23432511469428 27.748012412917305 21.89762026131516 48 23.486885055312605 24.0088446507302 29.849041754979027 22.65522853897817 49 20.947781682898256 25.04167449181266 30.666076427083055 23.344467398206028 50 19.043722444307317 29.86084654665129 28.618660513866157 22.476770495175238 51 19.876943989840726 29.76873339951171 26.213344780404046 24.140977830243518 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1085.0 1 2285.5 2 3486.0 3 8148.0 4 12810.0 5 10038.5 6 7267.0 7 6970.5 8 6674.0 9 7074.0 10 7474.0 11 7205.5 12 6937.0 13 6925.0 14 6913.0 15 6568.5 16 6224.0 17 6385.5 18 6547.0 19 6400.0 20 6253.0 21 6980.0 22 7707.0 23 8198.5 24 8690.0 25 10679.0 26 16346.0 27 20024.0 28 24137.0 29 28250.0 30 34922.0 31 41594.0 32 47063.5 33 52533.0 34 60171.0 35 67809.0 36 68712.5 37 69616.0 38 80213.0 39 90810.0 40 112645.0 41 134480.0 42 163002.0 43 191524.0 44 194572.0 45 197620.0 46 197385.5 47 197151.0 48 189914.5 49 182678.0 50 174626.0 51 166574.0 52 153388.0 53 140202.0 54 125869.5 55 111537.0 56 104997.0 57 98457.0 58 95359.0 59 92261.0 60 88160.5 61 84060.0 62 70685.5 63 57311.0 64 49314.0 65 41317.0 66 33640.0 67 25963.0 68 21335.5 69 16708.0 70 13745.0 71 10782.0 72 8494.5 73 6207.0 74 5357.0 75 3607.0 76 2707.0 77 2118.5 78 1530.0 79 1122.5 80 715.0 81 546.5 82 378.0 83 269.0 84 160.0 85 124.0 86 88.0 87 61.5 88 35.0 89 33.5 90 32.0 91 21.5 92 11.0 93 9.5 94 8.0 95 5.5 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2236380.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.637181014710563 #Duplication Level Percentage of deduplicated Percentage of total 1 82.16587188392795 16.95671971300138 2 7.107101489607325 2.9334107986189086 3 2.119028972796749 1.3119235346106808 4 0.998332432960626 0.8241106852745936 5 0.5942271661426424 0.6131586795772099 6 0.3880363704696988 0.4804786090604677 7 0.27595089517581417 0.39863940024402883 8 0.22647788948040154 0.3739092160829328 9 0.19775525459701085 0.3672999887155817 >10 2.930181082094897 15.929865544612646 >50 1.9379603523241449 29.278982389071377 >100 1.0529933113342742 28.926191994552948 >500 0.004127681524326598 0.5234314860299772 >1k 0.0017379711681375152 0.7917601750140812 >5k 2.172463960171894E-4 0.2901177855331891 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6471 0.28935154133018537 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 4563 0.204035092426153 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4135 0.18489702107870756 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.7886047988266752E-4 0.0 0.0 0.040243607973600194 0.0 2 1.7886047988266752E-4 0.0 0.0 0.15914111197560343 0.0 3 1.7886047988266752E-4 0.0 0.0 0.22961214104937444 0.0 4 1.7886047988266752E-4 0.0 0.0 0.3579445353651884 0.0 5 1.7886047988266752E-4 0.0 0.0 0.6375481805417684 0.0 6 1.7886047988266752E-4 0.0 0.0 0.9114730054820737 0.0 7 1.7886047988266752E-4 0.0 0.0 1.0900651946449171 0.0 8 1.7886047988266752E-4 0.0 0.0 1.6112646330230105 0.0 9 1.7886047988266752E-4 0.0 0.0 1.8333199187973421 0.0 10 1.7886047988266752E-4 0.0 0.0 2.2235040556613814 0.0 11 1.7886047988266752E-4 0.0 0.0 2.576708788309679 0.0 12 1.7886047988266752E-4 0.0 0.0 2.887478872105814 0.0 13 1.7886047988266752E-4 0.0 0.0 3.0224738192972573 0.0 14 1.7886047988266752E-4 0.0 0.0 3.0692011196666042 0.0 15 1.7886047988266752E-4 0.0 0.0 3.1577370572085246 0.0 16 1.7886047988266752E-4 0.0 0.0 3.3520242534810722 0.0 17 1.7886047988266752E-4 0.0 0.0 3.5605755730242623 0.0 18 1.7886047988266752E-4 0.0 0.0 3.8506872713939493 0.0 19 2.235755998533344E-4 0.0 0.0 3.98818626530375 0.0 20 2.235755998533344E-4 0.0 0.0 4.146880226079647 0.0 21 2.235755998533344E-4 0.0 0.0 4.333789427557035 0.0 22 2.235755998533344E-4 0.0 0.0 4.5319221241470595 0.0 23 2.235755998533344E-4 0.0 0.0 4.7459286883266705 0.0 24 2.235755998533344E-4 0.0 0.0 4.90278932918377 0.0 25 2.235755998533344E-4 0.0 0.0 5.037784276375214 0.0 26 2.235755998533344E-4 0.0 0.0 5.172913368926569 0.0 27 2.235755998533344E-4 0.0 0.0 5.303168513401121 0.0 28 2.235755998533344E-4 0.0 0.0 5.447419490426493 0.0 29 2.235755998533344E-4 0.0 0.0 5.597975299367728 0.0 30 2.235755998533344E-4 0.0 0.0 5.792173065400334 0.0 31 2.235755998533344E-4 0.0 0.0 5.965488870406639 0.0 32 2.235755998533344E-4 0.0 0.0 6.13312585517667 0.0 33 2.235755998533344E-4 0.0 0.0 6.301970148185908 0.0 34 2.235755998533344E-4 0.0 0.0 6.469651848075908 0.0 35 2.235755998533344E-4 0.0 0.0 6.681869807456693 0.0 36 2.6829071982400126E-4 0.0 0.0 6.8747261198901795 0.0 37 2.6829071982400126E-4 0.0 0.0 7.064765379765514 0.0 38 2.6829071982400126E-4 0.0 0.0 7.249036389164632 0.0 39 2.6829071982400126E-4 0.0 0.0 7.4326366717641905 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 25 3.8919927E-5 45.000004 29 ACGGTAC 25 3.8919927E-5 45.000004 13 CGAATCG 20 7.034719E-4 45.0 15 CGACGGT 235 0.0 44.042553 28 TATAGCG 110 0.0 42.954544 1 GCTACGA 570 0.0 42.236843 10 CGTTAGG 345 0.0 41.086956 2 TCGTTAG 105 0.0 40.714287 1 TACGCGA 50 1.0822987E-9 40.500004 41 TGATTCG 50 1.0822987E-9 40.500004 15 GTATACG 90 0.0 40.0 1 ACGTTAG 85 0.0 39.705883 1 CGTAAGG 375 0.0 39.600002 2 TCACGAC 290 0.0 39.568966 25 ACGTAAG 160 0.0 39.375 1 CATACGA 755 0.0 39.33775 18 GACCGAT 640 0.0 38.671875 9 ATACGAG 105 0.0 38.57143 1 GTATTCG 35 6.2509407E-6 38.571426 40 GCGATGA 305 0.0 38.360657 9 >>END_MODULE