SRR1548068_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548068_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1506569
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5265	0.34946955632300947	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2665	0.1768919976449801	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTT	25	3.8913844E-5	45.000004	14
TACGATA	25	3.8913844E-5	45.000004	36
CGAATTA	25	3.8913844E-5	45.000004	17
TAGTCGG	25	3.8913844E-5	45.000004	2
CATTGCG	20	7.033985E-4	45.0	13
GTTACGT	20	7.033985E-4	45.0	15
CGCTATA	20	7.033985E-4	45.0	29
CGTAACT	40	6.8175723E-9	45.0	33
CCGGTTA	20	7.033985E-4	45.0	28
ATACGCG	35	1.2122655E-7	45.0	1
TACGTAC	20	7.033985E-4	45.0	10
AGTCGAC	20	7.033985E-4	45.0	38
CGTATCG	30	2.1659525E-6	44.999996	34
CGCGAAC	30	2.1659525E-6	44.999996	42
TACGTCA	30	2.1659525E-6	44.999996	38
TATAGCG	190	0.0	42.63158	1
TCGATTG	75	0.0	42.0	1
TTTAGCG	145	0.0	41.89655	1
TCGTCCC	145	0.0	41.89655	38
CGCCGGT	140	0.0	41.785713	28