##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548067_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1478796 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46763853837852 31.0 31.0 33.0 30.0 34.0 2 31.857786334288164 31.0 31.0 34.0 30.0 34.0 3 31.80299852041796 31.0 31.0 34.0 30.0 34.0 4 35.604224653028545 37.0 35.0 37.0 33.0 37.0 5 35.56952818373866 37.0 35.0 37.0 33.0 37.0 6 35.651693675124896 37.0 35.0 37.0 33.0 37.0 7 36.03921433382292 37.0 35.0 37.0 35.0 37.0 8 36.07284845238965 37.0 35.0 37.0 35.0 37.0 9 37.87857216275943 39.0 38.0 39.0 35.0 39.0 10 37.261389671056726 39.0 37.0 39.0 34.0 39.0 11 36.98857110784719 39.0 37.0 39.0 33.0 39.0 12 36.51614691952101 39.0 35.0 39.0 32.0 39.0 13 36.33380331026051 39.0 35.0 39.0 32.0 39.0 14 37.400895728687395 40.0 35.0 41.0 32.0 41.0 15 37.56737778571216 40.0 35.0 41.0 32.0 41.0 16 37.66314894008369 40.0 35.0 41.0 33.0 41.0 17 37.60423885377023 40.0 35.0 41.0 33.0 41.0 18 37.46686223116644 39.0 36.0 41.0 32.0 41.0 19 37.37272348586282 39.0 36.0 41.0 32.0 41.0 20 37.20321802331085 39.0 35.0 41.0 32.0 41.0 21 37.09447077216871 39.0 35.0 41.0 32.0 41.0 22 37.0045841346609 39.0 35.0 41.0 32.0 41.0 23 36.91271006954306 38.0 35.0 41.0 32.0 41.0 24 36.91557456200855 39.0 35.0 41.0 32.0 41.0 25 36.893503228301945 38.0 35.0 41.0 32.0 41.0 26 36.75781514150701 38.0 35.0 41.0 31.0 41.0 27 36.69673369416742 38.0 35.0 41.0 31.0 41.0 28 36.62485968314764 38.0 35.0 41.0 31.0 41.0 29 36.56757794854733 38.0 35.0 40.0 31.0 41.0 30 36.46578703215319 38.0 35.0 40.0 31.0 41.0 31 36.35853626869426 38.0 35.0 40.0 30.0 41.0 32 36.168614873180616 38.0 35.0 41.0 30.0 41.0 33 35.99450093183914 38.0 35.0 41.0 30.0 41.0 34 35.76817356822713 38.0 35.0 41.0 28.0 41.0 35 35.56622008715198 38.0 35.0 41.0 27.0 41.0 36 35.390361483260705 38.0 35.0 40.0 26.0 41.0 37 35.292073416482054 38.0 34.0 40.0 25.0 41.0 38 35.1892512557513 38.0 34.0 40.0 25.0 41.0 39 35.12006524226465 38.0 34.0 40.0 24.0 41.0 40 35.00776104344345 38.0 34.0 40.0 24.0 41.0 41 34.94894157138645 38.0 34.0 40.0 24.0 41.0 42 34.88053997982142 38.0 34.0 40.0 24.0 41.0 43 34.772861165434584 38.0 34.0 40.0 23.0 41.0 44 34.61981503872069 38.0 34.0 40.0 23.0 41.0 45 34.60048377193338 38.0 34.0 40.0 23.0 41.0 46 34.52498383820351 37.0 34.0 40.0 23.0 41.0 47 34.4518479898512 37.0 33.0 40.0 23.0 41.0 48 34.32861665841671 37.0 33.0 40.0 23.0 41.0 49 34.234014022218076 37.0 33.0 40.0 23.0 41.0 50 34.076171425943805 37.0 33.0 40.0 22.0 41.0 51 33.699722612179094 36.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 4.0 13 8.0 14 13.0 15 43.0 16 109.0 17 244.0 18 595.0 19 1194.0 20 2155.0 21 3486.0 22 5500.0 23 8266.0 24 12684.0 25 18908.0 26 25860.0 27 28545.0 28 29658.0 29 31055.0 30 35196.0 31 42179.0 32 51237.0 33 65675.0 34 106590.0 35 158895.0 36 101909.0 37 133808.0 38 213669.0 39 401232.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.697813626761228 23.54198956448354 29.324463955812703 15.435732852942529 2 33.089215821519666 24.798822826136938 29.311412797978896 12.800548554364497 3 28.46214082266925 24.52677718901052 33.473853053429956 13.537228934890274 4 24.895320247011757 27.593934525113674 33.36741511337601 14.14333011449855 5 22.747829991425455 31.75860632568657 31.3555081295865 14.13805555330147 6 21.070722398491746 40.122775555249 28.71599598592368 10.09050606033557 7 86.62580910416312 3.3479939085580432 8.48034482105713 1.5458521662217102 8 87.77803023540773 2.364626358199508 8.198155797013246 1.6591876093795224 9 82.91677824392276 5.095158493801715 9.676453006364637 2.3116102559108898 10 39.41253560328808 33.27585414080103 17.0368326665747 10.274777589336189 11 32.462625000338114 22.668576328310326 28.650266838698506 16.21853183265305 12 30.083054052080204 21.49025288139811 30.944565714270254 17.482127352251425 13 23.303417104184756 29.13153673664251 31.062837605727907 16.50220855344483 14 18.18871568492206 32.66840050960376 31.623699279684285 17.5191845257899 15 17.35486165772696 26.641876229040378 40.67504916161526 15.328212951617399 16 20.551110497999726 24.23944884892845 38.46940348770216 16.740037165369664 17 20.72449479170893 23.482008336511594 30.8879656152708 24.905531256508674 18 21.753710450934406 25.331756374780568 33.73305040046092 19.18148277382411 19 24.499457666912814 26.226741213798256 29.974587434642775 19.29921368464616 20 26.074049429400674 26.126321683315346 29.10009223719837 18.69953665008561 21 23.325462065085382 26.582233113965685 31.497109810954317 18.595195009994615 22 22.143960356939026 23.71219559695861 31.718911871549558 22.42493217455281 23 19.471651262243068 27.795044076397286 31.115042237063122 21.61826242429652 24 19.644765065634477 25.58757259283904 35.709387907459856 19.058274434066632 25 19.479563104038693 26.691173089459262 33.48487553388026 20.34438827262178 26 19.179589341599517 30.446795906940512 30.156492173362654 20.217122578097317 27 19.10872087833616 29.42603307014625 32.520374683188216 18.944871368329373 28 17.905579944765876 27.308431994676752 36.11025455843808 18.67573350211929 29 18.545492414099037 26.103262383722974 35.15224547537321 20.19899972680478 30 20.130971411878313 26.764070230106114 33.090433027949764 20.014525330065812 31 23.96503642152129 26.29720394158491 29.85361064000714 19.884148996886655 32 24.274409722503982 27.25392819564024 30.008939705003257 18.46272237685252 33 23.619146927635725 26.65736179973438 29.891952642555157 19.831538630074736 34 20.22260000703275 27.45138612763356 31.02517182897438 21.300842036359306 35 19.979429211331382 27.03388432211069 31.768141109388992 21.218545357168942 36 24.122394163900903 26.001017043594928 29.97309973789488 19.90348905460929 37 21.137803997305916 28.74683188215278 30.769355610915905 19.3460085096254 38 21.0258210057371 29.556003667848707 27.961733734740964 21.456441591673226 39 20.559089962374795 28.534632227839406 29.46782382424621 21.43845398553959 40 21.956375321545366 26.76190630756372 29.189083551754262 22.09263481913665 41 19.785149540572196 26.59021257834076 29.632281937468047 23.992355943619 42 21.768857908731157 27.272253914671126 28.177449763185724 22.78143841341199 43 21.534545670937707 27.442054211669493 28.764346130230265 22.25905398716253 44 21.125564310425506 29.007043567875492 29.2960624724438 20.571329649255205 45 19.992953727221334 30.118353038552986 27.319860210603764 22.56883302362192 46 21.5228469646929 29.098401672712125 28.74081347258175 20.637937890013227 47 21.716450409657586 27.66818411734952 29.06147974433255 21.553885728660344 48 22.0622722809637 26.040508629993592 30.311483125461525 21.585735963581186 49 21.155994471177905 25.378077841703657 31.325010346254658 22.140917340863783 50 19.673978019956774 28.563371824105555 29.827170211442283 21.935479944495388 51 19.844251675011293 29.935907319197508 28.30721749314983 21.912623512641368 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 637.0 1 1097.0 2 1557.0 3 11104.5 4 20652.0 5 15521.5 6 10391.0 7 9663.5 8 8936.0 9 9018.5 10 9101.0 11 9107.5 12 9114.0 13 8839.0 14 8564.0 15 8251.0 16 7938.0 17 7573.5 18 7209.0 19 7045.5 20 6882.0 21 7111.0 22 7340.0 23 8557.5 24 9775.0 25 10568.0 26 13732.5 27 16104.0 28 18571.0 29 21038.0 30 24432.5 31 27827.0 32 32654.0 33 37481.0 34 41962.5 35 46444.0 36 50862.0 37 55280.0 38 62307.5 39 69335.0 40 81907.0 41 94479.0 42 105288.5 43 116098.0 44 120511.0 45 124924.0 46 128027.5 47 131131.0 48 128001.0 49 124871.0 50 120278.5 51 115686.0 52 105113.0 53 94540.0 54 83873.0 55 73206.0 56 66083.0 57 58960.0 58 53655.5 59 48351.0 60 41793.5 61 35236.0 62 29847.5 63 24459.0 64 20962.5 65 17466.0 66 13948.5 67 10431.0 68 8701.5 69 6972.0 70 5444.5 71 3917.0 72 3208.0 73 2499.0 74 1787.5 75 924.0 76 772.0 77 588.0 78 404.0 79 282.5 80 161.0 81 119.5 82 78.0 83 67.5 84 57.0 85 40.5 86 24.0 87 20.0 88 16.0 89 12.5 90 9.0 91 6.0 92 3.0 93 3.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1478796.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.129257085325005 #Duplication Level Percentage of deduplicated Percentage of total 1 77.93141206704315 21.142213129892127 2 6.335692163655253 3.437652430425647 3 2.498178348756034 2.0332116800518545 4 1.4928757526737304 1.6200244036293479 5 1.0471768212370367 1.4204564598566496 6 0.7688727031827328 1.2515367138319886 7 0.6503434450396157 1.2350334159964964 8 0.5845498286402329 1.268672206429084 9 0.529940958971637 1.2939214064386688 >10 7.181644648991013 46.14495284943417 >50 0.9327546031470396 16.248141871788665 >100 0.04480645111490602 1.6990077580039449 >500 0.0010012614557905343 0.17927896432886997 >1k 5.006307278952671E-4 0.20881924822396783 >5k 0.0 0.0 >10k+ 2.5031536394763356E-4 0.8170774616685467 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12032 0.8136348759396157 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1853 0.12530463972042122 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.76225794497686E-5 0.0 0.0 0.033270309089286146 0.0 2 6.76225794497686E-5 0.0 0.0 0.11739279792479829 0.0 3 6.76225794497686E-5 0.0 0.0 0.2105767124065794 0.0 4 6.76225794497686E-5 0.0 0.0 0.31295729769352904 0.0 5 6.76225794497686E-5 0.0 0.0 0.577158715603775 0.0 6 6.76225794497686E-5 0.0 0.0 0.9893859599295644 0.0 7 6.76225794497686E-5 0.0 0.0 1.2543312262137576 0.0 8 6.76225794497686E-5 0.0 0.0 1.810662187347004 0.0 9 6.76225794497686E-5 0.0 0.0 2.0738492665655035 0.0 10 6.76225794497686E-5 0.0 0.0 2.464910643523515 0.0 11 6.76225794497686E-5 0.0 0.0 2.7775298283197953 0.0 12 6.76225794497686E-5 0.0 0.0 3.0405140397999455 0.0 13 6.76225794497686E-5 0.0 0.0 3.168929318175056 0.0 14 6.76225794497686E-5 0.0 0.0 3.2318183170633406 0.0 15 6.76225794497686E-5 0.0 0.0 3.3037011190184447 0.0 16 6.76225794497686E-5 0.0 0.0 3.4513888325367392 0.0 17 6.76225794497686E-5 0.0 0.0 3.6328202132004686 0.0 18 6.76225794497686E-5 0.0 0.0 3.874638557312841 0.0 19 6.76225794497686E-5 0.0 0.0 4.004676777594746 0.0 20 6.76225794497686E-5 0.0 0.0 4.14377642352292 0.0 21 6.76225794497686E-5 0.0 0.0 4.307625933529709 0.0 22 6.76225794497686E-5 0.0 0.0 4.5002826623821 0.0 23 6.76225794497686E-5 0.0 0.0 4.717824500472005 0.0 24 6.76225794497686E-5 0.0 0.0 4.8826207265910915 0.0 25 6.76225794497686E-5 0.0 0.0 5.031322778801133 0.0 26 6.76225794497686E-5 0.0 0.0 5.169069973140312 0.0 27 6.76225794497686E-5 0.0 0.0 5.314120406060065 0.0 28 6.76225794497686E-5 0.0 0.0 5.470328564589031 0.0 29 6.76225794497686E-5 0.0 0.0 5.642428029288691 0.0 30 6.76225794497686E-5 0.0 0.0 5.839547848384767 0.0 31 6.76225794497686E-5 0.0 0.0 6.018341948449955 0.0 32 6.76225794497686E-5 0.0 0.0 6.190035677672918 0.0 33 6.76225794497686E-5 0.0 0.0 6.374171961514637 0.0 34 6.76225794497686E-5 0.0 0.0 6.5602693001604 0.0 35 6.76225794497686E-5 0.0 0.0 6.76198745465906 0.0 36 6.76225794497686E-5 0.0 0.0 6.951736412595111 0.0 37 6.76225794497686E-5 0.0 0.0 7.147300912363842 0.0 38 6.76225794497686E-5 0.0 0.0 7.353955515162335 0.0 39 6.76225794497686E-5 0.0 0.0 7.617074971801384 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7570 0.0 43.424698 1 GCGTATG 80 0.0 42.1875 1 CTAGCGG 160 0.0 40.78125 2 ACGGGAC 415 0.0 40.66265 5 AACGGGA 595 0.0 40.462185 4 ACGGGAT 765 0.0 39.411762 5 GCGGGTC 160 0.0 39.375 5 CACCGAA 40 3.4591176E-7 39.375 24 CGTAAGG 235 0.0 39.255318 2 TACCGGG 195 0.0 39.23077 3 TAGTGCG 75 0.0 39.000004 1 TACGGGA 620 0.0 38.830643 4 TCTAGCG 35 6.2495037E-6 38.57143 1 GGCGATT 555 0.0 38.10811 8 GTTAGCG 65 9.094947E-12 38.076927 1 CGACCCG 95 0.0 37.894737 32 CGACGGT 155 0.0 37.741936 28 CGGTCTA 155 0.0 37.741936 31 CGGCGAT 30 1.1400799E-4 37.500004 22 ACTCGCG 30 1.1400799E-4 37.500004 1 >>END_MODULE