SRR1548066_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548066_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1899996
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19171	1.0090021242149982	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6028	0.31726382581858065	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3446	0.18136880288169027	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1909	0.10047389573451734	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTCG	35	1.2124838E-7	45.000004	12
GCCACGG	60	0.0	45.000004	2
CTATGCG	45	3.8562575E-10	45.0	1
CGAACTA	25	3.8917722E-5	45.0	21
GCGACTA	25	3.8917722E-5	45.0	9
GTCGATC	20	7.0344517E-4	45.0	15
ATCCGCG	25	3.8917722E-5	45.0	1
TAACACG	20	7.0344517E-4	45.0	1
GTCACGA	25	3.8917722E-5	45.0	19
TATTACG	20	7.0344517E-4	45.0	1
GCGATAC	20	7.0344517E-4	45.0	9
TACTCGA	25	3.8917722E-5	45.0	32
ACGTCCG	25	3.8917722E-5	45.0	1
CCGGTTA	20	7.0344517E-4	45.0	30
ACGAGTT	25	3.8917722E-5	45.0	30
TCGGTCA	20	7.0344517E-4	45.0	39
TACGTCG	20	7.0344517E-4	45.0	10
CGTTTTT	9575	0.0	43.637077	1
CCAGTCG	195	0.0	42.69231	28
CTCACGA	665	0.0	42.631577	24