##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548066_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1899996 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50977949427262 31.0 31.0 33.0 30.0 34.0 2 31.88882608173912 31.0 31.0 34.0 30.0 34.0 3 31.832234909968232 33.0 31.0 34.0 30.0 34.0 4 35.62350815475401 37.0 35.0 37.0 33.0 37.0 5 35.57019804252219 37.0 35.0 37.0 33.0 37.0 6 35.65735296284834 37.0 35.0 37.0 33.0 37.0 7 36.050055894854516 37.0 35.0 37.0 35.0 37.0 8 36.0867638668713 37.0 35.0 37.0 35.0 37.0 9 37.92299615367611 39.0 38.0 39.0 35.0 39.0 10 37.290734822599624 39.0 37.0 39.0 34.0 39.0 11 36.97292415352453 39.0 37.0 39.0 33.0 39.0 12 36.1231081539119 37.0 35.0 39.0 32.0 39.0 13 35.77990374716578 37.0 35.0 39.0 31.0 39.0 14 36.801410108231806 38.0 35.0 41.0 31.0 41.0 15 37.06571855940749 38.0 35.0 41.0 32.0 41.0 16 37.22832679647747 38.0 35.0 41.0 33.0 41.0 17 37.17904616641298 38.0 35.0 41.0 33.0 41.0 18 37.091707561489606 38.0 35.0 41.0 32.0 41.0 19 36.977222057309596 38.0 35.0 41.0 32.0 41.0 20 36.778593744407885 38.0 35.0 41.0 32.0 41.0 21 36.64124871841835 38.0 35.0 40.0 32.0 41.0 22 36.5275126895004 38.0 35.0 40.0 32.0 41.0 23 36.45864464977821 38.0 35.0 40.0 31.0 41.0 24 36.45612727605742 37.0 35.0 40.0 32.0 41.0 25 36.4033255859486 37.0 35.0 40.0 31.0 41.0 26 36.27683321438572 37.0 35.0 40.0 31.0 41.0 27 36.200459895705045 37.0 35.0 40.0 31.0 41.0 28 36.165748769997414 37.0 35.0 40.0 31.0 41.0 29 36.108931281960594 37.0 35.0 40.0 31.0 41.0 30 36.04642957143068 37.0 35.0 40.0 31.0 41.0 31 35.898606102328635 37.0 35.0 40.0 30.0 41.0 32 35.67356510224232 37.0 35.0 40.0 30.0 41.0 33 35.51909109282335 37.0 34.0 40.0 30.0 41.0 34 35.345539674820365 37.0 34.0 40.0 29.0 41.0 35 35.1614403398744 37.0 34.0 40.0 27.0 41.0 36 34.940097768626885 36.0 34.0 40.0 26.0 41.0 37 34.81119381303961 36.0 34.0 40.0 25.0 41.0 38 34.705636222392044 36.0 34.0 40.0 25.0 41.0 39 34.69252251057371 36.0 34.0 40.0 25.0 41.0 40 34.51037265341611 36.0 34.0 40.0 24.0 41.0 41 34.44646251886846 36.0 34.0 40.0 23.0 41.0 42 34.36928709323598 36.0 34.0 40.0 23.0 41.0 43 34.214727820479624 35.0 33.0 40.0 23.0 41.0 44 34.03224743631039 35.0 33.0 40.0 23.0 41.0 45 33.98166311929078 35.0 33.0 40.0 23.0 41.0 46 33.84714599399157 35.0 33.0 40.0 23.0 41.0 47 33.76021738993135 35.0 33.0 40.0 23.0 41.0 48 33.6441550403264 35.0 33.0 40.0 22.0 41.0 49 33.54677167741406 35.0 33.0 40.0 22.0 41.0 50 33.365757612121286 35.0 33.0 40.0 20.0 41.0 51 32.97698205680433 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 8.0 13 17.0 14 16.0 15 56.0 16 138.0 17 293.0 18 707.0 19 1412.0 20 2698.0 21 4496.0 22 7189.0 23 10945.0 24 16916.0 25 25144.0 26 33367.0 27 36733.0 28 38146.0 29 42205.0 30 48851.0 31 58921.0 32 73343.0 33 96257.0 34 174070.0 35 306147.0 36 131501.0 37 148395.0 38 221558.0 39 420359.0 40 104.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.9774315314348 25.81915961928341 29.333956492539986 14.869452356741803 2 31.698382522910574 25.82263331080697 29.621062360131283 12.85792180615117 3 27.23784681651961 24.531367434457756 34.37212499394736 13.858660755075276 4 24.335682811963817 27.288899555578013 33.898755576327524 14.476662056130646 5 22.336415445085148 31.148539260082654 32.064593820197516 14.450451474634685 6 19.89419977726269 40.062294867989195 28.966113612870764 11.077391741877351 7 86.25728685744602 3.839797557468542 8.07449068313828 1.8284249019471621 8 87.38586818077512 2.8680060379074486 7.804753273164786 1.9413725081526487 9 83.53786007970542 4.72085204389904 9.283809018545302 2.457478857850227 10 47.5300474316788 23.601154949799895 17.194825673317208 11.673971945204094 11 41.06992856827067 21.90573032785332 23.24268051090634 13.781660592969668 12 38.79860799706947 20.96772835311232 25.680159326651214 14.553504323166996 13 20.431885119758146 40.042873774471104 25.277000583159122 14.248240522611628 14 14.455925170368781 41.64371924993526 27.95547990627349 15.944875673422471 15 13.06876435529338 26.417739826820686 45.48204312009078 15.031452697795153 16 13.923660891917667 21.49678209848863 46.34504493693671 18.234512072656994 17 14.947610416021927 23.587944395672412 28.858481807330122 32.60596338097554 18 19.540620085515968 26.453897797679577 34.31028275849002 19.69519935831444 19 24.899210314126975 29.36016707403595 25.504685273021625 20.23593733881545 20 27.300373263943712 25.18668460354653 27.480636801340637 20.032305331169116 21 19.485146284518493 31.22059204335167 29.451535687443553 19.842725984686282 22 21.413676660371916 26.2280025852686 27.072951732529965 25.285369021829517 23 17.102983374701843 32.66812140657138 26.192370931307224 24.036524287419553 24 18.530144273987943 25.791896403992432 38.240501558950655 17.437457763068977 25 15.757296331150169 29.135113968660985 34.508598965471506 20.598990734717336 26 15.359242861563919 35.91760193179354 27.997164204556217 20.725991002086317 27 16.840035452706218 35.8525491632614 29.306272223730996 18.00114316030139 28 14.225819422777732 29.925799843789147 38.53866008138965 17.309720652043477 29 14.39171450887265 25.889159766652142 38.19139619241304 21.527729532062175 30 16.677508794755358 32.60938444080935 32.55175274053209 18.161354023903208 31 25.387948185154073 29.3745881570277 26.40768717407826 18.829776483739966 32 25.301526950583053 29.663746660519287 27.323215417295614 17.711510971602046 33 23.92036614813926 30.486379971326254 26.418950355684963 19.174303524849527 34 16.962614658136122 29.572588573870682 30.129642378194482 23.335154389798713 35 18.400407158751914 27.61868972355731 32.029962168341406 21.950940949349366 36 26.09968652565584 26.610845496516834 28.255901591371774 19.03356638645555 37 19.001776845845992 31.080486485234704 31.247486836814392 18.67024983210491 38 18.28824902789269 32.5100158105596 27.52774216366771 21.673992997879996 39 18.364143924513527 32.215594138092925 28.25311211181497 21.16714982557858 40 22.481678908797704 28.938376712372026 26.5604769694252 22.01946740940507 41 16.499403156638223 25.43926408266123 30.179379325009105 27.881953435691443 42 20.198726734161546 27.987901027160056 26.17863406028223 25.634738178396166 43 20.786727972058888 29.34511441076718 26.462792553247482 23.40536506392645 44 18.818355407064015 32.18254143692934 27.346636519234778 21.652466636771866 45 16.934140913980873 37.16049928526166 23.216259402651374 22.689100398106103 46 20.99430735643654 34.7042309562757 25.881265013189502 18.42019667409826 47 20.165200347790204 29.339798610102335 28.37711237286815 22.117888669239303 48 20.924675630896065 26.30868696565677 31.312434341967037 21.45420306148013 49 18.823565944349358 26.066054875905003 31.443803039585344 23.666576140160295 50 17.807458542017983 32.094278093217035 29.042903248217367 21.055360116547615 51 16.905930328274376 33.318438565133825 25.615738138396082 24.159892968195724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1508.0 1 1960.5 2 2413.0 3 14375.5 4 26338.0 5 19133.5 6 11929.0 7 11706.5 8 11484.0 9 13155.0 10 14826.0 11 15678.5 12 16531.0 13 16457.0 14 16383.0 15 15094.5 16 13806.0 17 12603.5 18 11401.0 19 10667.5 20 9934.0 21 9301.5 22 8669.0 23 9335.0 24 10001.0 25 10694.5 26 13716.5 27 16045.0 28 19695.0 29 23345.0 30 27576.5 31 31808.0 32 37957.5 33 44107.0 34 50705.0 35 57303.0 36 60984.0 37 64665.0 38 74337.5 39 84010.0 40 109814.5 41 135619.0 42 159780.0 43 183941.0 44 188879.0 45 193817.0 46 192712.0 47 191607.0 48 182422.0 49 173237.0 50 161103.5 51 148970.0 52 131630.5 53 114291.0 54 98057.0 55 81823.0 56 70366.0 57 58909.0 58 50418.0 59 41927.0 60 35970.5 61 30014.0 62 25114.0 63 20214.0 64 17589.0 65 14964.0 66 12055.0 67 9146.0 68 7017.0 69 4888.0 70 4140.0 71 3392.0 72 2787.5 73 2183.0 74 1604.5 75 811.5 76 597.0 77 549.5 78 502.0 79 464.5 80 427.0 81 308.5 82 190.0 83 163.5 84 137.0 85 122.5 86 108.0 87 88.5 88 69.0 89 58.0 90 47.0 91 37.0 92 27.0 93 21.0 94 15.0 95 14.5 96 14.0 97 7.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1899996.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.44937528894133 #Duplication Level Percentage of deduplicated Percentage of total 1 79.11831743717231 20.13511752688189 2 8.540296507686868 4.346904218059162 3 3.127487448794682 2.3877780538748867 4 1.615383862230752 1.6444204058243963 5 1.0124386393290605 1.288296544465519 6 0.6848381839738771 1.0457222373688946 7 0.5115614716306406 0.9113243912423898 8 0.3820995181644809 0.7779355228393222 9 0.32852827587278144 0.7524755447143738 >10 2.936829833494422 16.163054682627383 >50 0.8984180862526487 16.862872470450398 >100 0.8398470453557827 31.499502306486892 >500 0.0024970673947429457 0.3897660055369657 >1k 0.001040444747809561 0.4603581367028319 >5k 2.0808894956191216E-4 0.3192268317088083 >10k+ 2.0808894956191216E-4 1.0152451212159197 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19171 1.0090021242149982 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6028 0.31726382581858065 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3446 0.18136880288169027 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1909 0.10047389573451734 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06100012842132299 0.0 2 0.0 0.0 0.0 0.21215834138598186 0.0 3 0.0 0.0 0.0 0.3686849867052352 0.0 4 0.0 0.0 0.0 0.5559485388390292 0.0 5 0.0 0.0 0.0 1.0530022168467723 0.0 6 0.0 0.0 0.0 1.7157930858801809 0.0 7 0.0 0.0 0.0 2.164530872696574 0.0 8 0.0 0.0 0.0 3.04605904433483 0.0 9 0.0 0.0 0.0 3.468691513034764 0.0 10 0.0 0.0 0.0 4.100798106943383 0.0 11 0.0 0.0 0.0 4.727062583289649 0.0 12 0.0 0.0 0.0 5.1755372116572875 0.0 13 0.0 0.0 0.0 5.385590285453232 0.0 14 0.0 0.0 0.0 5.460590443348302 0.0 15 0.0 0.0 0.0 5.572116993930513 0.0 16 0.0 0.0 0.0 5.8539070608569705 0.0 17 0.0 0.0 0.0 6.17622352889164 0.0 18 0.0 0.0 0.0 6.593961250444738 0.0 19 0.0 0.0 0.0 6.7932774595314935 0.0 20 0.0 0.0 0.0 7.00227789953242 0.0 21 0.0 0.0 0.0 7.304594325461738 0.0 22 0.0 0.0 0.0 7.602700216210981 0.0 23 0.0 0.0 0.0 7.963543081143329 0.0 24 0.0 0.0 0.0 8.216333087017025 0.0 25 0.0 0.0 0.0 8.442017772668995 0.0 26 0.0 0.0 0.0 8.645386621866573 0.0 27 0.0 0.0 0.0 8.848808102753901 0.0 28 0.0 0.0 0.0 9.07680858275491 0.0 29 0.0 0.0 0.0 9.308388017658984 0.0 30 0.0 0.0 0.0 9.595546516940036 0.0 31 0.0 0.0 0.0 9.864231293118511 0.0 32 0.0 0.0 0.0 10.102968637828711 0.0 33 0.0 0.0 0.0 10.345705990959981 0.0 34 0.0 0.0 0.0 10.589285451127266 0.0 35 0.0 0.0 0.0 10.903180848801787 0.0 36 0.0 0.0 0.0 11.15912875606054 0.0 37 5.263168975092579E-5 0.0 0.0 11.4354451272529 0.0 38 5.263168975092579E-5 0.0 0.0 11.704235166810877 0.0 39 5.263168975092579E-5 5.263168975092579E-5 0.0 11.968656776119529 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGTCG 35 1.2124838E-7 45.000004 12 GCCACGG 60 0.0 45.000004 2 CTATGCG 45 3.8562575E-10 45.0 1 CGAACTA 25 3.8917722E-5 45.0 21 GCGACTA 25 3.8917722E-5 45.0 9 GTCGATC 20 7.0344517E-4 45.0 15 ATCCGCG 25 3.8917722E-5 45.0 1 TAACACG 20 7.0344517E-4 45.0 1 GTCACGA 25 3.8917722E-5 45.0 19 TATTACG 20 7.0344517E-4 45.0 1 GCGATAC 20 7.0344517E-4 45.0 9 TACTCGA 25 3.8917722E-5 45.0 32 ACGTCCG 25 3.8917722E-5 45.0 1 CCGGTTA 20 7.0344517E-4 45.0 30 ACGAGTT 25 3.8917722E-5 45.0 30 TCGGTCA 20 7.0344517E-4 45.0 39 TACGTCG 20 7.0344517E-4 45.0 10 CGTTTTT 9575 0.0 43.637077 1 CCAGTCG 195 0.0 42.69231 28 CTCACGA 665 0.0 42.631577 24 >>END_MODULE