Basic Statistics
Measure | Value |
---|---|
Filename | SRR1548065_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 4747748 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 67639 | 1.4246543835098242 | No Hit |
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6203 | 0.13065141620827392 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 5980 | 0.12595445251095888 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACGGT | 555 | 0.0 | 43.783783 | 28 |
CGTTTTT | 34430 | 0.0 | 43.732212 | 1 |
TATAGCG | 280 | 0.0 | 42.589283 | 1 |
GGGCGAT | 5710 | 0.0 | 39.640984 | 7 |
CACGACG | 615 | 0.0 | 39.14634 | 26 |
ACGGGAT | 2120 | 0.0 | 38.632076 | 5 |
TAGGGAC | 4930 | 0.0 | 38.245438 | 5 |
TAGGGAT | 7445 | 0.0 | 37.988583 | 5 |
CGGTCTA | 635 | 0.0 | 37.913387 | 31 |
TAACGGG | 1365 | 0.0 | 37.912086 | 3 |
TAGCGGG | 3050 | 0.0 | 37.770493 | 3 |
CATACGA | 870 | 0.0 | 37.75862 | 18 |
CGTTAGG | 725 | 0.0 | 37.551723 | 2 |
CGGTTTT | 3035 | 0.0 | 37.43822 | 1 |
AGGGCGA | 3045 | 0.0 | 37.38916 | 6 |
TCACGAC | 655 | 0.0 | 37.099236 | 25 |
AGGGATC | 5600 | 0.0 | 37.084824 | 6 |
AGGGATT | 8080 | 0.0 | 36.980198 | 6 |
TAAGGGA | 6200 | 0.0 | 36.689514 | 4 |
TCGTCCC | 1080 | 0.0 | 36.666668 | 38 |