SRR1548061_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548061_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1535170
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11879	0.7737905248278693	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1874	0.12207117127093416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	20	7.034027E-4	45.0	1
CGTCGTT	20	7.034027E-4	45.0	34
TCGCGCC	25	3.89142E-5	45.0	40
CGTTTTT	7225	0.0	43.47405	1
CGACGGT	160	0.0	42.1875	28
CACGACG	155	0.0	42.09677	26
ACGGGAC	485	0.0	41.75258	5
CGCGTAA	55	6.184564E-11	40.90909	31
ATTCGCG	50	1.0822987E-9	40.5	1
AGGGCGA	940	0.0	40.212765	6
TACGGGA	655	0.0	40.190838	4
GGCGATA	465	0.0	39.677418	8
GGGCGAT	1920	0.0	39.02344	7
TGGGCGA	570	0.0	38.68421	6
CGTCCTA	35	6.24966E-6	38.571426	25
TAGGGCG	445	0.0	38.426968	5
CGTTAGG	205	0.0	38.414635	2
CGAGGGT	170	0.0	38.38235	4
CGAGGGA	1300	0.0	38.25	4
CTCACGT	165	0.0	38.181816	45