SRR1548057_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548057_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1689816
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7904	0.467743233582828	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5993	0.3546539978317166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTC	35	1.2123746E-7	45.000004	18
TATGCGT	20	7.034229E-4	45.000004	15
CCGAACG	20	7.034229E-4	45.000004	37
TATCGTG	35	1.2123746E-7	45.000004	1
GTGCGAC	20	7.034229E-4	45.000004	11
AATCGAC	20	7.034229E-4	45.000004	16
CCAATCG	50	2.1827873E-11	45.0	24
TATAGCG	90	0.0	45.0	1
ATCGGCA	25	3.8915878E-5	45.0	33
CGTACAA	30	2.1661108E-6	44.999996	37
ACGCGAG	80	0.0	42.187504	1
CTTAACG	80	0.0	42.187504	1
CGTTTTT	5430	0.0	41.80939	1
GTACGGG	630	0.0	41.428574	3
AATCGGT	55	6.184564E-11	40.909092	26
CGACGGT	165	0.0	40.90909	28
ACGTAGG	210	0.0	40.714287	2
CGTTAGG	205	0.0	40.609756	2
TGTTACG	100	0.0	40.5	1
ATTCGAT	95	0.0	40.263157	14