SRR1548051_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548051_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1336622
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3589	0.26851271339241756	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3006	0.22489529575302514	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2223	0.16631478458382398	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1621	0.12127587305909975	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1368	0.10234755974389169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	50	2.1827873E-11	45.000004	1
CTCGTTA	20	7.0336985E-4	45.000004	37
ATTACGA	65	0.0	45.000004	12
AAACGCG	25	3.8911472E-5	45.000004	1
CGCTAAA	30	2.1657688E-6	45.000004	28
CCGTTAT	25	3.8911472E-5	45.000004	30
GCGTAAC	40	6.8157533E-9	45.000004	32
TACGTAG	40	6.8157533E-9	45.000004	1
ACGGTAC	20	7.0336985E-4	45.000004	37
GCGATAA	110	0.0	42.954544	9
ATTACGG	90	0.0	42.5	2
CGACGGT	170	0.0	41.02941	28
TGTTCGG	55	6.184564E-11	40.909092	2
CGAGGGA	720	0.0	40.625	4
ACGTAAG	50	1.0822987E-9	40.500004	1
ACGCTAG	45	1.9286745E-8	40.0	1
CGCGTAA	45	1.9286745E-8	40.0	31
CGGTCTA	170	0.0	39.705883	31
CATACGA	510	0.0	39.264706	18
CGCATGG	180	0.0	38.75	2