SRR1548050_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548050_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2478113
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37289	1.5047336420897677	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3531	0.14248744911955186	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3301	0.13320619358358557	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	2844	0.11476474236646998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	100	0.0	45.0	6
TAATTCG	20	7.034868E-4	45.0	18
AGTCGTA	20	7.034868E-4	45.0	36
CGTTTTT	17185	0.0	43.481236	1
CGACGGT	225	0.0	43.0	28
TTCGTAG	185	0.0	42.567566	1
AGGGCGA	1550	0.0	41.80645	6
TACGGGA	1170	0.0	40.576923	4
CGGTCCG	50	1.0822987E-9	40.5	29
CGGTCTA	245	0.0	40.408165	31
CGGTTTT	1575	0.0	40.142857	1
ACGGGAT	1245	0.0	40.120483	5
TCTTGCG	45	1.9297659E-8	40.0	1
ACGCCGA	125	0.0	39.6	12
GGGCGAT	2950	0.0	39.584747	7
CGTTCGA	40	3.4603727E-7	39.375	14
TAGGGCG	650	0.0	38.76923	5
AATGCGG	360	0.0	38.75	2
TAGCGCG	105	0.0	38.57143	1
CGAAAGG	240	0.0	38.437504	2