SRR1548049_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548049_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2169055
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6101	0.28127456426877145	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5839	0.2691955713432808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCGAC	30	2.1663964E-6	45.000004	9
ACGTACT	30	2.1663964E-6	45.000004	10
GCCCGTA	30	2.1663964E-6	45.000004	25
CGTTATG	25	3.891954E-5	45.0	29
TCGTCTA	50	2.1827873E-11	45.0	20
CGCGTAA	35	1.2125929E-7	45.0	31
TGGTCGA	50	2.1827873E-11	45.0	19
CCCGATA	20	7.034673E-4	45.0	17
GTTAGCG	130	0.0	43.26923	1
TTACGCG	105	0.0	42.857143	1
AAACGCG	80	0.0	42.1875	1
TATCGTG	75	0.0	42.000004	1
TACGGGA	710	0.0	41.197186	4
CGGTCTA	355	0.0	41.197186	31
CGTTCGA	55	6.184564E-11	40.909092	22
ACGGTCT	360	0.0	40.625	30
ATAGTAG	300	0.0	40.500004	1
CGCAAGG	240	0.0	40.312504	2
CGTTTTT	4130	0.0	40.151333	1
CGACGGC	45	1.929584E-8	40.0	32