##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548047_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 120892 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56810210766635 31.0 31.0 33.0 30.0 34.0 2 31.979849783277636 31.0 31.0 34.0 30.0 34.0 3 32.077060516824936 33.0 31.0 34.0 30.0 34.0 4 35.769471925354864 37.0 35.0 37.0 35.0 37.0 5 35.673452337623665 37.0 35.0 37.0 33.0 37.0 6 35.7408926976144 37.0 35.0 37.0 33.0 37.0 7 36.06981437977699 37.0 35.0 37.0 35.0 37.0 8 36.09581279158257 37.0 35.0 37.0 35.0 37.0 9 37.96012970254442 39.0 38.0 39.0 35.0 39.0 10 37.419150977732194 39.0 37.0 39.0 35.0 39.0 11 37.03128412136452 39.0 37.0 39.0 33.0 39.0 12 35.66018429672766 37.0 35.0 39.0 32.0 39.0 13 35.06812692320418 35.0 35.0 39.0 30.0 39.0 14 35.92073090030771 37.0 35.0 40.0 31.0 41.0 15 36.33095655626509 37.0 35.0 40.0 31.0 41.0 16 36.60472984151143 37.0 35.0 40.0 32.0 41.0 17 36.584207391721534 37.0 35.0 40.0 32.0 41.0 18 36.55367600833802 36.0 35.0 40.0 32.0 41.0 19 36.471553121794656 36.0 35.0 40.0 32.0 41.0 20 36.333413294510805 36.0 35.0 40.0 32.0 41.0 21 36.14536942063991 36.0 35.0 40.0 31.0 41.0 22 36.03408000529398 35.0 35.0 40.0 31.0 41.0 23 36.02646990702445 35.0 35.0 40.0 31.0 41.0 24 36.035420044337094 35.0 35.0 40.0 31.0 41.0 25 35.98710419217152 35.0 35.0 40.0 31.0 41.0 26 35.82862389570857 35.0 35.0 40.0 31.0 41.0 27 35.76564206068226 35.0 35.0 40.0 31.0 41.0 28 35.76453363332561 36.0 35.0 40.0 31.0 41.0 29 35.77512986798134 36.0 35.0 40.0 31.0 41.0 30 35.766113555901136 36.0 35.0 40.0 31.0 41.0 31 35.62300234920425 36.0 34.0 40.0 30.0 41.0 32 35.48752605631473 35.0 34.0 40.0 30.0 41.0 33 35.39767726565861 35.0 34.0 40.0 30.0 41.0 34 35.322941137544255 35.0 34.0 40.0 30.0 41.0 35 35.22495285047811 35.0 34.0 40.0 30.0 41.0 36 34.99972702908381 35.0 34.0 40.0 29.0 41.0 37 34.856136055322104 35.0 34.0 40.0 27.0 41.0 38 34.83369453727294 35.0 34.0 40.0 28.0 41.0 39 34.872911358898854 35.0 34.0 40.0 28.0 41.0 40 34.70143599245608 35.0 34.0 40.0 27.0 41.0 41 34.725283724315915 35.0 34.0 40.0 27.0 41.0 42 34.66227707375178 35.0 34.0 40.0 27.0 41.0 43 34.5314081990537 35.0 34.0 40.0 27.0 41.0 44 34.41239287959501 35.0 34.0 40.0 27.0 41.0 45 34.3600569103001 35.0 34.0 40.0 27.0 41.0 46 34.3044783773947 35.0 34.0 39.0 27.0 41.0 47 34.232389239982794 35.0 33.0 39.0 27.0 41.0 48 34.174511133904645 35.0 34.0 39.0 26.0 41.0 49 34.17682725076928 35.0 34.0 39.0 26.0 41.0 50 34.00080236905668 35.0 34.0 39.0 26.0 41.0 51 33.55179002746253 35.0 33.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 1.0 12 0.0 13 2.0 14 2.0 15 4.0 16 8.0 17 24.0 18 53.0 19 98.0 20 193.0 21 282.0 22 433.0 23 614.0 24 862.0 25 1223.0 26 1586.0 27 1989.0 28 2181.0 29 2563.0 30 3092.0 31 3813.0 32 4739.0 33 6756.0 34 13882.0 35 25013.0 36 6426.0 37 8373.0 38 12838.0 39 23837.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.473546636667436 25.179499057009565 30.87218343645568 12.47477086986732 2 29.10945306554611 26.674221619296564 31.135228137511167 13.081097177646164 3 28.756245243688582 25.896668100453297 31.184859213182015 14.162227442676107 4 25.45908744995533 28.40386460642557 30.643880488369785 15.493167455249313 5 23.948648380372564 32.512490487377164 29.515600701452538 14.023260430797738 6 21.276842140091983 41.536247228931614 26.06789531151772 11.11901531945869 7 90.03408000529399 3.925818085563974 4.525526916586705 1.5145749925553387 8 91.9639016642954 2.712338285411773 3.9994375144757304 1.324322535817093 9 88.88429341891937 4.170664725540152 5.030936703834827 1.9141051517056547 10 58.22469642325381 25.006617476756116 8.77725573238924 7.991430367600834 11 55.060715349237334 17.539622142077228 16.19461999139728 11.205042517288158 12 49.89329318730768 19.367700095953413 18.110379512291964 12.628627204446943 13 21.875723786520197 46.33474506170797 19.08314859544056 12.706382556331272 14 13.204347682228768 49.40939019951692 24.913145617576017 12.473116500678291 15 11.737749396155246 23.20997253747146 52.847996558912094 12.204281507461205 16 13.737054561095855 17.644674585580518 52.05803527115111 16.560235582172517 17 15.503920854977995 16.750488038910763 27.51298679813387 40.23260430797737 18 22.055222843529762 22.07838401217616 34.496906329616515 21.369486814677565 19 29.539589054693444 23.774112430930085 25.01240776891771 21.673890745458756 20 33.65896833537372 22.22562286999967 22.671475366442774 21.443933428183833 21 22.54574330807663 28.393111206696886 27.77189557621679 21.289249909009694 22 24.70055917678589 22.57965787645171 24.761770836779938 27.958012109982466 23 18.351917413890085 30.525593091354263 23.73688912417695 27.3856003705787 24 19.915296297521756 22.946927836415977 39.45008768156702 17.68768818449525 25 16.15408794626609 23.37706382556331 38.228336035469674 22.240512192700923 26 15.369089766072197 37.86189326009992 25.71965059722728 21.049366376600602 27 17.22446481156735 35.96433180028455 29.213678324454882 17.597525063693215 28 13.696522515964663 29.75713860305066 41.183039407074084 15.363299473910597 29 14.17463521159382 24.433378552757834 40.83893061575621 20.553055619892135 30 18.030142606624093 30.32458723488734 32.72921285113986 18.91605730734871 31 31.008668894550507 25.7502564272243 23.66575124904874 19.575323429176457 32 31.562882572874962 28.236773318333718 24.502034874102506 15.698309234688812 33 29.422128842272443 28.74052873639281 23.018892896138702 18.818449525196044 34 19.487641862157957 29.6893094663005 27.06630711709625 23.75674155444529 35 19.45538166297191 26.73377891010158 31.29239321046885 22.518446216457665 36 32.70605168249347 21.487774211693083 27.790920821890612 18.015253283922842 37 21.592826655196372 30.88293683618436 29.643814313602224 17.88042219501704 38 20.92197994904543 32.55054097872481 22.252919961618634 24.274559110611126 39 20.096449723720344 31.668762200972765 27.57668001191146 20.658108063395428 40 23.865929920921154 26.39215167256725 23.479634715283062 26.262283691228532 41 16.92915991132581 23.123945339641992 28.39228402210237 31.554610726929823 42 23.73027164742084 24.782450451642788 23.937894980643883 27.54938292029249 43 24.038811501174603 26.833041061443268 24.443304767892002 24.684842669490124 44 19.981471065082886 32.26350792442842 26.88101776792509 20.87400324256361 45 16.639645303245874 39.92902756179069 21.058465407140257 22.37286172782318 46 23.896535750918176 32.74989246600271 25.080236905667867 18.273334877411244 47 23.12725407802005 28.720676306124478 25.274625285378683 22.87744433047679 48 24.281176587367238 23.013102603977103 29.926711444926053 22.77900936372961 49 21.587036363034777 21.638321807894652 32.41488270522449 24.35975912384608 50 19.64315256592661 33.496840154848954 25.941336068557057 20.918671210667373 51 17.8018396585382 36.98259603613142 22.12718790325249 23.088376402077888 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 52.0 1 110.0 2 168.0 3 361.0 4 554.0 5 455.0 6 356.0 7 343.0 8 330.0 9 347.5 10 365.0 11 362.0 12 359.0 13 337.5 14 316.0 15 310.5 16 305.0 17 267.0 18 229.0 19 246.0 20 263.0 21 239.0 22 215.0 23 261.0 24 307.0 25 428.5 26 565.0 27 580.0 28 757.5 29 935.0 30 1169.5 31 1404.0 32 1660.0 33 1916.0 34 2283.5 35 2651.0 36 2745.0 37 2839.0 38 3851.0 39 4863.0 40 7072.5 41 9282.0 42 11615.5 43 13949.0 44 14402.5 45 14856.0 46 13690.0 47 12524.0 48 11684.0 49 10844.0 50 10067.0 51 9290.0 52 8768.0 53 8246.0 54 6928.5 55 5611.0 56 5004.5 57 4398.0 58 3972.0 59 3546.0 60 3196.5 61 2847.0 62 2501.5 63 2156.0 64 1796.5 65 1437.0 66 1185.5 67 934.0 68 739.5 69 545.0 70 419.5 71 294.0 72 259.0 73 224.0 74 187.5 75 122.5 76 94.0 77 66.5 78 39.0 79 41.0 80 43.0 81 24.5 82 6.0 83 7.0 84 8.0 85 6.5 86 5.0 87 4.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 120892.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.394070740826525 #Duplication Level Percentage of deduplicated Percentage of total 1 66.9578706727629 20.35122257883069 2 5.641737426518615 3.429507328855507 3 3.3774221641628563 3.079608245376038 4 2.8630524711517524 3.4807927737153825 5 2.465708687132593 3.747146213148926 6 2.3405181798388854 4.268272507692817 7 2.0955802307859783 4.458524964431063 8 1.9567820596559982 4.757965787645171 9 1.7989331591552364 4.920921152764451 >10 10.486065752231658 46.688780068160014 >50 0.008164598301763554 0.13979419647288488 >100 0.008164598301763554 0.6774641829070576 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 409 0.3383184991562717 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 298 0.24650100916520531 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.027297091618965687 0.0 2 0.0 0.0 0.0 0.11166992025940509 0.0 3 0.0 0.0 0.0 0.155510703768653 0.0 4 0.0 0.0 0.0 0.23243887105846542 0.0 5 0.0 0.0 0.0 0.39787578996128775 0.0 6 0.0 0.0 0.0 0.5633127088641101 0.0 7 0.0 0.0 0.0 0.658438937233233 0.0 8 0.0 0.0 0.0 0.9338914072064322 0.0 9 0.0 0.0 0.0 1.0306720047645832 0.0 10 0.0 0.0 0.0 1.2523574760943652 0.0 11 0.0 0.0 0.0 1.458326440128379 0.0 12 0.0 0.0 0.0 1.6700856963239916 0.0 13 0.0 0.0 0.0 1.7445323098302616 0.0 14 0.0 0.0 0.0 1.7726565860437415 0.0 15 0.0 0.0 0.0 1.8173245541475036 0.0 16 0.0 0.0 0.0 1.9414022433246203 0.0 17 0.0 0.0 0.0 2.0671343016907655 0.0 18 0.0 0.0 0.0 2.2540780200509545 0.0 19 0.0 0.0 0.0 2.330179002746253 0.0 20 0.0 0.0 0.0 2.4253052311153755 0.0 21 0.0 0.0 0.0 2.556000397048605 0.0 22 0.0 0.0 0.0 2.6469907024451578 0.0 23 0.0 0.0 0.0 2.7876120835125566 0.0 24 8.271845945141118E-4 0.0 0.0 2.864540250802369 0.0 25 8.271845945141118E-4 0.0 0.0 2.930715018363498 0.0 26 8.271845945141118E-4 0.0 0.0 3.0241868775435927 0.0 27 8.271845945141118E-4 0.0 0.0 3.0969791218608345 0.0 28 8.271845945141118E-4 0.0 0.0 3.1846606888793305 0.0 29 8.271845945141118E-4 0.0 0.0 3.2599344869801143 0.0 30 8.271845945141118E-4 0.0 0.0 3.360851007510836 0.0 31 8.271845945141118E-4 0.0 0.0 3.513052972901433 0.0 32 8.271845945141118E-4 0.0 0.0 3.6106607550540977 0.0 33 8.271845945141118E-4 0.0 0.0 3.7041326142341924 0.0 34 8.271845945141118E-4 0.0 0.0 3.797604473414287 0.0 35 8.271845945141118E-4 0.0 0.0 3.945670515832313 0.0 36 8.271845945141118E-4 0.0 0.0 4.054031697713662 0.0 37 8.271845945141118E-4 0.0 0.0 4.184726863646891 0.0 38 8.271845945141118E-4 0.0 0.0 4.294742414717268 0.0 39 8.271845945141118E-4 0.0 0.0 4.4055851503821595 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAA 20 7.0082274E-4 45.000004 29 GTTGATC 20 7.0082274E-4 45.000004 16 TTTAGAG 30 2.149358E-6 45.000004 1 TGTCAAC 20 7.0082274E-4 45.000004 13 CGAACTA 20 7.0082274E-4 45.000004 36 CATATGC 20 7.0082274E-4 45.000004 33 CTCAAAG 20 7.0082274E-4 45.000004 44 GGCACCG 35 1.1998964E-7 45.000004 8 TGAACGG 20 7.0082274E-4 45.000004 2 GCACGGG 30 2.149358E-6 45.000004 3 ATAGAAC 40 6.728442E-9 45.000004 37 GCACCGA 35 1.1998964E-7 45.000004 9 ATCCGGA 20 7.0082274E-4 45.000004 28 AGCGGGT 20 7.0082274E-4 45.000004 4 GTAGCAT 20 7.0082274E-4 45.000004 29 TAGGGTG 20 7.0082274E-4 45.000004 5 TGTTAAG 20 7.0082274E-4 45.000004 1 GAACGGG 40 6.728442E-9 45.000004 3 GAACGAA 20 7.0082274E-4 45.000004 33 ACTAACC 40 6.728442E-9 45.000004 14 >>END_MODULE