SRR1548046_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548046_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	709014
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8445	1.191090725994127	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1280	0.18053240133481144	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	770	0.1086015226779725	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	717	0.10112635293520297	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGCG	30	2.164321E-6	45.000004	1
TTCGCGG	30	2.164321E-6	45.000004	2
TACACGG	45	3.8380676E-10	45.000004	2
GATACGA	20	7.031456E-4	45.0	9
TAGACGT	20	7.031456E-4	45.0	23
TTTCGGT	20	7.031456E-4	45.0	41
TTAGACG	25	3.8892886E-5	45.0	1
TAGCGCG	20	7.031456E-4	45.0	1
CGTCTTA	20	7.031456E-4	45.0	18
ATATGCG	20	7.031456E-4	45.0	1
CGACAGT	20	7.031456E-4	45.0	4
AGACGTA	20	7.031456E-4	45.0	24
CGTAATT	20	7.031456E-4	45.0	27
ATCGGCC	20	7.031456E-4	45.0	38
CGCGTAA	35	1.2110468E-7	45.0	31
AGGGCGT	40	6.8084773E-9	45.0	6
GCGTAAG	55	1.8189894E-12	45.0	1
CGTTTTT	4880	0.0	44.07787	1
CTACGGG	140	0.0	43.392857	3
CGGTTTT	435	0.0	41.896553	1