SRR1548040_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548040_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	275306
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	886	0.32182371615584116	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	545	0.19796154097622282	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	329	0.11950338895628863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	20	7.02393E-4	45.000004	20
GAGTCTA	20	7.02393E-4	45.000004	9
AAGACGG	25	3.8830527E-5	45.000004	2
TAACGCG	20	7.02393E-4	45.000004	1
ACGGGCT	25	3.8830527E-5	45.000004	5
CGTTAGG	20	7.02393E-4	45.000004	2
CGGGGTA	25	3.8830527E-5	45.000004	6
AATGCGG	20	7.02393E-4	45.000004	2
CTACGGG	40	6.7830115E-9	45.000004	3
GTATGCG	25	3.8830527E-5	45.000004	1
TATTACG	25	3.8830527E-5	45.000004	1
TAGGGTC	40	6.7830115E-9	45.000004	5
CTCGAGG	20	7.02393E-4	45.000004	2
TGTAACG	20	7.02393E-4	45.000004	1
AAGTCGG	20	7.02393E-4	45.000004	2
GACCGAT	110	0.0	45.0	9
TTACGGG	75	0.0	45.0	3
TGGGCGA	110	0.0	45.0	6
AGACGGG	110	0.0	42.954544	3
AACGGGA	100	0.0	42.750004	4