##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548038_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2727265 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.552354465004317 31.0 31.0 33.0 30.0 34.0 2 31.961256790227573 31.0 31.0 34.0 30.0 34.0 3 32.05433428728048 33.0 31.0 34.0 30.0 34.0 4 35.78081924565453 37.0 35.0 37.0 35.0 37.0 5 35.702041789118404 37.0 35.0 37.0 33.0 37.0 6 35.76384583089652 37.0 35.0 37.0 35.0 37.0 7 36.045990030305084 37.0 35.0 37.0 35.0 37.0 8 36.06288937818657 37.0 35.0 37.0 35.0 37.0 9 37.89947328184097 39.0 38.0 39.0 35.0 39.0 10 37.39359138184225 39.0 37.0 39.0 35.0 39.0 11 37.02708097672944 39.0 37.0 39.0 33.0 39.0 12 36.07071076701384 37.0 35.0 39.0 32.0 39.0 13 35.708807908289074 37.0 35.0 39.0 31.0 39.0 14 36.64687993282648 38.0 35.0 41.0 31.0 41.0 15 36.90091245258528 38.0 35.0 41.0 32.0 41.0 16 37.06496838407709 38.0 35.0 41.0 32.0 41.0 17 37.00674411910834 38.0 35.0 41.0 32.0 41.0 18 36.9570368116043 38.0 35.0 41.0 32.0 41.0 19 36.893401264636914 38.0 35.0 41.0 32.0 41.0 20 36.75142202902908 38.0 35.0 41.0 32.0 41.0 21 36.6036413769839 38.0 35.0 41.0 31.0 41.0 22 36.50457656296693 38.0 35.0 41.0 31.0 41.0 23 36.43047265300585 38.0 35.0 40.0 31.0 41.0 24 36.43782984051788 38.0 35.0 40.0 31.0 41.0 25 36.39524578652973 38.0 35.0 40.0 31.0 41.0 26 36.25574669128229 38.0 35.0 40.0 31.0 41.0 27 36.19208034422764 37.0 35.0 40.0 31.0 41.0 28 36.133236410836496 37.0 35.0 40.0 31.0 41.0 29 36.087062313343225 37.0 35.0 40.0 31.0 41.0 30 36.02065622519264 37.0 35.0 40.0 30.0 41.0 31 35.89606217217615 37.0 35.0 40.0 30.0 41.0 32 35.73457071461702 37.0 34.0 40.0 30.0 41.0 33 35.611486965879735 37.0 34.0 40.0 30.0 41.0 34 35.48742494770402 37.0 34.0 40.0 29.0 41.0 35 35.34961692391462 37.0 34.0 40.0 29.0 41.0 36 35.16513173453991 37.0 34.0 40.0 27.0 41.0 37 35.063879014323874 36.0 34.0 40.0 27.0 41.0 38 34.975040929282635 36.0 34.0 40.0 27.0 41.0 39 34.94409050825644 36.0 34.0 40.0 27.0 41.0 40 34.75116426163208 36.0 34.0 40.0 25.0 41.0 41 34.72186567861942 36.0 34.0 40.0 25.0 41.0 42 34.684812073634205 36.0 34.0 40.0 26.0 41.0 43 34.54838602042706 35.0 34.0 40.0 25.0 41.0 44 34.38397258792233 35.0 34.0 40.0 24.0 41.0 45 34.34853048750305 35.0 34.0 40.0 24.0 41.0 46 34.300890819190656 35.0 34.0 40.0 24.0 41.0 47 34.22776591200342 35.0 33.0 40.0 24.0 41.0 48 34.127879028990584 35.0 33.0 40.0 24.0 41.0 49 34.05552082397567 35.0 33.0 40.0 24.0 41.0 50 33.861162739961095 35.0 33.0 39.0 24.0 41.0 51 33.46370484716373 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 13.0 11 4.0 12 13.0 13 28.0 14 62.0 15 117.0 16 242.0 17 641.0 18 1366.0 19 2705.0 20 4681.0 21 7300.0 22 10975.0 23 15806.0 24 22342.0 25 30714.0 26 39088.0 27 45688.0 28 51001.0 29 58002.0 30 67735.0 31 82498.0 32 103984.0 33 138220.0 34 262148.0 35 431735.0 36 174953.0 37 219953.0 38 338731.0 39 616408.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.01150969927748 23.433109727144227 29.64306732202408 12.912313251554213 2 29.863434613064737 25.745719612872236 30.81160063286846 13.579245141194567 3 28.84450172608822 25.260398237795005 31.57767947009183 14.317420566024937 4 25.86264994417484 27.83473553175067 30.86784745890113 15.434767065173352 5 23.56683343936141 33.022460230303984 28.687751281961965 14.722955048372638 6 21.45640412647836 41.06703968994579 26.447338267458427 11.029217916117428 7 88.5560075753548 4.181735181583014 5.50943894341034 1.7528182996518489 8 89.840297880844 2.947165016967548 5.259701569154446 1.9528355330340104 9 85.618192584879 4.95874071643203 6.726079057223995 2.6969876414649843 10 52.42149186089361 25.869946631515457 11.675176412999837 10.033385094591102 11 45.55552907399904 19.811826133507378 20.81708231506656 13.815562477427019 12 41.16860664438549 20.237014004873014 23.434686398278128 15.159692952463367 13 24.328842265053087 36.02550540559865 23.830724187051864 15.814928142296402 14 17.89961738224925 38.94256700393984 27.170406982819785 15.987408630991121 15 16.512696785974228 23.37810957131045 44.896663873880975 15.212529768834345 16 19.676929084632405 20.274084109904976 41.95012219201288 18.098864613449738 17 20.37213105437132 19.6204622579764 27.659798369428714 32.34760831822357 18 24.55434290397156 23.00333850945911 32.26048807138287 20.181830515186462 19 28.75961815225143 25.091767760008654 25.403141975568932 20.745472112170983 20 31.1731716573197 24.57703963494563 24.083981571281118 20.165807136453555 21 24.709480010193364 26.649922174779494 28.01205603415876 20.628541780868378 22 24.74211343598807 23.207865755619643 26.708259006733854 25.341761801658436 23 20.753355467840493 27.623094932102312 26.2729511066948 25.350598493362398 24 22.432986893462864 23.436116402329805 35.23188982368784 18.899006880519494 25 19.734092579928976 25.034677598253197 32.40480848029069 22.826421341527134 26 18.235925001787507 32.29554150403426 26.502265089751088 22.966268404427144 27 19.223874467644325 30.728183729853903 29.47366684205605 20.57427496044572 28 16.474013343037804 28.028996082155565 36.067892192361214 19.429098382445417 29 17.996197655893358 24.420179190507707 35.3473534841682 22.23626966943073 30 20.585494992235812 28.118316335229615 31.4919158937617 19.804272778772873 31 28.783708220506625 25.498328911931917 25.242944855010425 20.475018012551036 32 29.280652961850056 26.56335192949713 26.45694496134406 17.69905014730875 33 27.884932340641633 27.03052325314922 24.949317356399174 20.135227049809977 34 20.601261703574828 28.399477131851874 28.71748803288276 22.281773131690542 35 20.67855525590656 27.243337189455367 29.854634588131333 22.223472966506737 36 28.933198644062823 25.335601784205053 26.712035684101103 19.019163887631017 37 21.619864589616338 30.079585225491474 29.1028924581953 19.197657726696892 38 21.99364564866267 30.622106762635827 23.8268741761435 23.557373412558004 39 22.057775830364854 29.246956199709235 27.08578007637688 21.60948789354903 40 24.699469981831616 25.515415627010945 24.991117474832844 24.793996916324595 41 18.887346847482732 24.464765983503618 27.576161465790822 29.07172570322283 42 23.51234661831542 24.776506866769456 25.278144954744036 26.43300156017109 43 23.43186305694533 25.322181746181617 26.459328301430183 24.786626895442872 44 21.254113553321734 28.74392477445353 27.250707210337094 22.751254461887644 45 19.45821179826676 33.51885497008908 23.951394528951162 23.07153870269299 46 23.47160983622787 30.5727166226971 25.462725477722188 20.492948063352845 47 21.841551884397006 28.222889964854904 26.738912426918542 23.19664572382955 48 23.91564442765921 23.97405459315468 29.998991663809715 22.111309315376392 49 22.86154810771964 23.03593526848326 30.12219201287737 23.98032461091973 50 21.318537069188363 30.081161896625375 26.468861661774707 22.131439372411556 51 19.17338432458892 31.24162851794747 25.47530218002284 24.10968497744077 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1376.0 1 2479.5 2 3583.0 3 10789.0 4 17995.0 5 13607.5 6 9220.0 7 9025.5 8 8831.0 9 9124.5 10 9418.0 11 9476.0 12 9534.0 13 9210.0 14 8886.0 15 8817.0 16 8748.0 17 8944.5 18 9141.0 19 8374.5 20 7608.0 21 8232.5 22 8857.0 23 10161.5 24 11466.0 25 11891.0 26 14547.5 27 16779.0 28 21037.0 29 25295.0 30 29970.5 31 34646.0 32 38475.5 33 42305.0 34 52983.0 35 63661.0 36 69121.0 37 74581.0 38 91039.0 39 107497.0 40 140254.5 41 173012.0 42 212342.0 43 251672.0 44 258153.5 45 264635.0 46 253705.0 47 242775.0 48 228631.5 49 214488.0 50 202815.0 51 191142.0 52 179449.0 53 167756.0 54 159651.0 55 151546.0 56 141221.0 57 130896.0 58 122773.0 59 114650.0 60 106080.5 61 97511.0 62 85758.5 63 74006.0 64 63911.5 65 53817.0 66 44533.0 67 35249.0 68 29588.5 69 23928.0 70 20634.5 71 17341.0 72 14752.5 73 12164.0 74 10059.0 75 6196.0 76 4438.0 77 3565.0 78 2692.0 79 2419.0 80 2146.0 81 1508.0 82 870.0 83 623.5 84 377.0 85 315.0 86 253.0 87 179.0 88 105.0 89 81.0 90 57.0 91 38.5 92 20.0 93 16.5 94 13.0 95 10.5 96 8.0 97 4.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2727265.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.72025267190963 #Duplication Level Percentage of deduplicated Percentage of total 1 82.07059711653756 15.36382314956081 2 7.5081352268981645 2.8110837708479837 3 2.3232933350013543 1.304779147865668 4 1.0786470968165687 0.8077018478491174 5 0.6192191773283849 0.5795969729439691 6 0.4248026872465159 0.47714481845765877 7 0.31802306339298325 0.41674304715479654 8 0.23006630634214686 0.34455195088143636 9 0.19571341465141565 0.32974241162010487 >10 2.2827466781217827 10.650042682505907 >50 1.3581547763894952 18.758069517081307 >100 1.5842970302140258 46.71713211485377 >500 0.005713082522762767 0.6990127251191637 >1k 1.970028456125092E-4 0.08865815084871106 >5k 3.940056912250184E-4 0.6519176924095946 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9718 0.35632767626174944 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7959 0.2918308268540094 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.333354111169981E-5 0.0 0.0 0.03223009131859207 0.0 2 7.333354111169981E-5 0.0 0.0 0.09265692919463271 0.0 3 7.333354111169981E-5 0.0 0.0 0.1378303905194398 0.0 4 7.333354111169981E-5 0.0 0.0 0.2194506217767617 0.0 5 7.333354111169981E-5 0.0 0.0 0.3774110693313631 0.0 6 7.333354111169981E-5 0.0 0.0 0.5820849825741173 0.0 7 7.333354111169981E-5 0.0 0.0 0.712618685752943 0.0 8 7.333354111169981E-5 0.0 0.0 1.0960797722260214 0.0 9 7.333354111169981E-5 0.0 0.0 1.2690369289379653 0.0 10 7.333354111169981E-5 0.0 0.0 1.576231132654876 0.0 11 1.1000031166754972E-4 0.0 0.0 1.861278606956053 0.0 12 1.1000031166754972E-4 0.0 0.0 2.099539282027966 0.0 13 1.1000031166754972E-4 0.0 0.0 2.2019862389610103 0.0 14 1.1000031166754972E-4 0.0 0.0 2.2417696850141073 0.0 15 1.1000031166754972E-4 0.0 0.0 2.2997398492629064 0.0 16 1.1000031166754972E-4 0.0 0.0 2.4313368887878517 0.0 17 1.1000031166754972E-4 0.0 0.0 2.580790645573496 0.0 18 1.1000031166754972E-4 0.0 0.0 2.8052279481458533 0.0 19 1.1000031166754972E-4 0.0 0.0 2.910498246411698 0.0 20 1.1000031166754972E-4 0.0 0.0 3.0247152366931704 0.0 21 1.1000031166754972E-4 0.0 0.0 3.1626922942948337 0.0 22 1.1000031166754972E-4 0.0 0.0 3.302392690112622 0.0 23 1.1000031166754972E-4 0.0 0.0 3.4644964827400346 0.0 24 1.1000031166754972E-4 0.0 0.0 3.585826826509342 0.0 25 1.1000031166754972E-4 0.0 0.0 3.6918304601863037 0.0 26 1.1000031166754972E-4 0.0 0.0 3.797137425222705 0.0 27 1.1000031166754972E-4 0.0 0.0 3.902921058276332 0.0 28 1.1000031166754972E-4 0.0 0.0 4.013398037961108 0.0 29 1.1000031166754972E-4 0.0 0.0 4.135681717764867 0.0 30 1.1000031166754972E-4 0.0 0.0 4.291625492938897 0.0 31 1.4666708222339962E-4 0.0 0.0 4.432792559578918 0.0 32 1.4666708222339962E-4 0.0 0.0 4.553902902724891 0.0 33 1.4666708222339962E-4 0.0 0.0 4.686856612760403 0.0 34 1.4666708222339962E-4 0.0 0.0 4.8282436800237605 0.0 35 1.4666708222339962E-4 0.0 0.0 4.998817496649574 0.0 36 1.4666708222339962E-4 0.0 0.0 5.141341233800162 0.0 37 1.4666708222339962E-4 0.0 0.0 5.297175008662524 0.0 38 1.4666708222339962E-4 0.0 0.0 5.478015521043976 0.0 39 1.8333385277924955E-4 0.0 0.0 5.718146201414237 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 25 3.892219E-5 45.000004 37 GACCGTA 25 3.892219E-5 45.000004 8 CGCGATA 25 3.892219E-5 45.000004 12 GTATCGC 20 7.034992E-4 45.000004 35 TATCGCC 20 7.034992E-4 45.000004 36 TATAGCG 255 0.0 43.235294 1 CTCACGA 465 0.0 42.580647 24 TAGCACG 85 0.0 42.35294 1 TCACGAC 455 0.0 42.032967 25 CGCAATC 130 0.0 41.53846 20 CGACGGT 475 0.0 40.73684 28 CGTTTTT 6215 0.0 40.402252 1 ACGTAAG 95 0.0 40.26316 1 CGTTAGG 405 0.0 39.444443 2 GGGCGAT 4410 0.0 38.97959 7 CGGTCTA 485 0.0 38.969074 31 TCGATAG 105 0.0 38.57143 1 TCGAGTA 35 6.2514464E-6 38.571426 39 ATAGGGC 1105 0.0 38.484165 4 ATTAGCG 330 0.0 38.181816 1 >>END_MODULE