##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548029_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2226830 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.868372080491103 31.0 31.0 31.0 30.0 33.0 2 31.2076835681215 31.0 31.0 33.0 30.0 34.0 3 31.344656754220125 31.0 31.0 34.0 30.0 34.0 4 35.25680092328557 37.0 35.0 37.0 33.0 37.0 5 35.110232932015464 37.0 35.0 37.0 32.0 37.0 6 35.14859239367172 37.0 35.0 37.0 32.0 37.0 7 35.5174018672283 35.0 35.0 37.0 35.0 37.0 8 35.60157039378848 37.0 35.0 37.0 35.0 37.0 9 37.42815796446069 39.0 37.0 39.0 35.0 39.0 10 36.539476744969306 38.0 35.0 39.0 32.0 39.0 11 36.20326832313199 38.0 35.0 39.0 31.0 39.0 12 35.804721959017975 37.0 35.0 39.0 30.0 39.0 13 35.6542079997126 37.0 35.0 39.0 30.0 39.0 14 36.69090994822236 38.0 35.0 40.0 31.0 41.0 15 36.848569940228934 38.0 35.0 40.0 31.0 41.0 16 36.92345172285267 38.0 35.0 40.0 31.0 41.0 17 36.85440334466484 38.0 35.0 40.0 31.0 41.0 18 36.73661617635832 38.0 35.0 40.0 31.0 41.0 19 36.6915323576564 38.0 35.0 40.0 31.0 41.0 20 36.567887086126916 38.0 35.0 40.0 30.0 41.0 21 36.46027626716004 38.0 35.0 40.0 30.0 41.0 22 36.333879999820375 38.0 35.0 40.0 30.0 41.0 23 36.2407619800344 38.0 34.0 40.0 30.0 41.0 24 36.12680132744754 38.0 34.0 40.0 30.0 41.0 25 35.96294553243849 38.0 34.0 40.0 29.0 41.0 26 35.740929033648726 38.0 34.0 40.0 29.0 41.0 27 35.82683410947401 38.0 34.0 40.0 29.0 41.0 28 35.85254150518899 38.0 34.0 40.0 29.0 41.0 29 35.82536116362722 38.0 34.0 40.0 29.0 41.0 30 35.74489476071366 38.0 34.0 40.0 29.0 41.0 31 35.67231939573295 38.0 34.0 40.0 29.0 41.0 32 35.528025938217105 38.0 34.0 40.0 27.0 41.0 33 35.36686949609984 38.0 34.0 40.0 27.0 41.0 34 35.18273464970384 38.0 34.0 40.0 26.0 41.0 35 35.01786710256284 38.0 34.0 40.0 25.0 41.0 36 34.94940161574974 38.0 33.0 40.0 25.0 41.0 37 34.908665681708975 38.0 33.0 40.0 25.0 41.0 38 34.84339846328638 38.0 33.0 40.0 24.0 41.0 39 34.79636927830144 38.0 33.0 40.0 24.0 41.0 40 34.65030918390717 38.0 33.0 40.0 24.0 41.0 41 34.567449243992584 37.0 33.0 40.0 24.0 41.0 42 34.53345832416485 37.0 33.0 40.0 24.0 41.0 43 34.488525841667304 37.0 33.0 40.0 24.0 41.0 44 34.338376526272775 37.0 33.0 40.0 23.0 41.0 45 34.217502458651985 37.0 33.0 40.0 23.0 41.0 46 34.153322884997955 37.0 33.0 40.0 23.0 41.0 47 34.10848246161584 37.0 33.0 40.0 23.0 41.0 48 34.008058540616034 37.0 33.0 40.0 23.0 41.0 49 33.85403914982284 36.0 32.0 40.0 23.0 41.0 50 33.76106977182811 36.0 32.0 40.0 23.0 41.0 51 33.42827786584517 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 5.0 13 13.0 14 33.0 15 78.0 16 201.0 17 602.0 18 1302.0 19 2431.0 20 4058.0 21 6603.0 22 10052.0 23 14559.0 24 21325.0 25 29877.0 26 38873.0 27 45287.0 28 50788.0 29 58879.0 30 69883.0 31 85095.0 32 102604.0 33 127266.0 34 179118.0 35 205745.0 36 195367.0 37 242484.0 38 330532.0 39 403722.0 40 47.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.667828258106816 24.974066273581727 28.958205161597427 13.399900306714027 2 30.922701777863598 26.624349411495263 29.10761036989802 13.345338440743118 3 28.641297270110428 26.12161682750816 31.67731708302834 13.55976881935307 4 25.135461620330247 29.101368312803398 31.033576878342757 14.729593188523596 5 23.083082228998173 33.205184050870514 29.494483189107385 14.217250531023923 6 21.580722372161322 42.24094340385211 26.268911412186828 9.909422811799733 7 90.98579595209333 2.681300323778645 5.322364078084093 1.010539646043928 8 91.46293161130397 2.1794209706174246 5.172195452728767 1.1854519653498472 9 86.28530242542088 5.500419879380106 6.325763529321951 1.888514165877054 10 36.55200441883754 40.52635360579838 12.723827144416052 10.19781483094803 11 31.281732328017853 25.218404637983145 26.565656112051663 16.934206921947343 12 29.699213680433623 23.193777701935037 28.519195448238076 18.587813169393264 13 24.46262175379351 27.64360099334031 29.48186435426144 18.411912898604744 14 20.006915660378205 30.185779785614532 30.068797348697473 19.73850720530979 15 19.68830130723944 27.36962408446087 34.77027882685252 18.17179578144717 16 23.055778842569932 26.433135892726433 32.97588949313599 17.535195771567654 17 23.054521449773894 25.792449356259795 28.9602259714482 22.19280322251811 18 23.32966593767822 26.543247576150854 30.537355792763705 19.58973069340722 19 25.307904060929665 28.02140262166398 27.246444497334778 19.424248820071583 20 27.005653776893613 27.428407197675618 27.78514749666566 17.780791528765107 21 25.87341647094749 27.08329778204892 28.924884252502437 18.118401494501153 22 25.37620743388584 24.571565858193036 28.935751718811048 21.116474989110078 23 22.264384798121096 27.780791528765103 29.214937826416925 20.739885846696872 24 22.07258748983982 26.79284004616428 32.01353493531163 19.121037528684273 25 21.510577816896664 28.51129183637727 29.74192012861332 20.236210218112742 26 21.439086055064823 30.82413116403138 27.540404970294098 20.1963778106097 27 20.538658092445313 30.086984637354448 29.322265282935835 20.052091987264404 28 19.539704422879158 29.116232491927985 31.233008357171403 20.111054728021447 29 20.319198142651214 27.081905668596168 31.472047709075234 21.12684847967739 30 21.499081654190036 28.230623801547488 29.911398714764935 20.358895829497538 31 23.528693254536716 28.056025830440586 28.053241603535067 20.36203931148763 32 24.445377509733568 27.523789422632174 28.14642339109856 19.884409676535704 33 23.66803932046901 27.665111391529663 28.10780346950598 20.55904581849535 34 21.15136763920012 28.53545174081542 29.14793675314236 21.165243866842104 35 21.62630286101768 28.166406955178434 29.394161206737827 20.813128977066054 36 23.72816964025094 28.599668587184475 27.346946107246623 20.325215665317963 37 21.501776067324403 30.294858610670772 28.18603126417373 20.01733405783109 38 21.854384932841754 29.759748162185705 27.292069893076704 21.093797011895834 39 21.461045522109906 29.54810201048127 27.678942712286076 21.311909755122755 40 23.24640857182632 27.95000067360328 27.504389648064738 21.29920110650566 41 20.174014181594462 27.701710503271464 28.779610477674545 23.34466483745953 42 21.52360081371277 28.343160456792837 27.30998774042024 22.823250989074154 43 21.701791335665497 27.484450990870428 28.261923900791707 22.551833772672364 44 20.78950795525478 28.677492219882073 28.336783679041506 22.19621614582164 45 20.475653731986725 30.141007620698478 26.87551362250374 22.507825024811055 46 21.531234984260138 29.80977443271377 27.328175029077208 21.330815553948888 47 20.960468468630296 28.593651064517722 28.697296156419664 21.748584310432317 48 21.638742068321335 27.377303161893813 29.42254235841982 21.561412411365037 49 21.227844065330537 27.55482008056295 29.10720620792786 22.11012964617865 50 20.599866177480994 29.51159271251061 28.55058536125344 21.337955748754954 51 20.168176286470004 29.07720840836526 28.053870299933088 22.700745005231653 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1422.0 1 1788.5 2 2155.0 3 10302.5 4 18450.0 5 14482.5 6 10515.0 7 9949.5 8 9384.0 9 9774.5 10 10165.0 11 10096.0 12 10027.0 13 9957.0 14 9887.0 15 9762.5 16 9638.0 17 9463.0 18 9288.0 19 9680.5 20 10073.0 21 10622.5 22 11172.0 23 12963.0 24 14754.0 25 17619.0 26 25290.0 27 30096.0 28 34840.0 29 39584.0 30 45085.5 31 50587.0 32 58514.5 33 66442.0 34 74812.0 35 83182.0 36 88547.0 37 93912.0 38 100069.0 39 106226.0 40 120086.0 41 133946.0 42 145499.5 43 157053.0 44 158521.0 45 159989.0 46 162775.5 47 165562.0 48 162108.0 49 158654.0 50 155684.5 51 152715.0 52 144059.5 53 135404.0 54 124359.0 55 113314.0 56 105122.0 57 96930.0 58 91675.5 59 86421.0 60 80285.5 61 74150.0 62 65726.0 63 57302.0 64 49171.5 65 41041.0 66 34475.5 67 27910.0 68 23121.0 69 18332.0 70 15155.5 71 11979.0 72 10039.0 73 8099.0 74 6483.5 75 3813.0 76 2758.0 77 2057.0 78 1356.0 79 1073.5 80 791.0 81 603.0 82 415.0 83 309.0 84 203.0 85 150.0 86 97.0 87 77.5 88 58.0 89 40.5 90 23.0 91 17.5 92 12.0 93 7.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2226830.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.91807206183039 #Duplication Level Percentage of deduplicated Percentage of total 1 75.04603476658328 17.199104327351844 2 6.36212802265861 2.91615416979761 3 2.4060056934985496 1.6542303559432185 4 1.4684315694736918 1.3461448210825908 5 1.054179978412865 1.207988635570242 6 0.8157864081708254 1.1217751013712454 7 0.6958470116241183 1.1163230369487611 8 0.618092646769474 1.1332393455640224 9 0.5537666738274569 1.1422138082596003 >10 10.076875530857558 57.142552135222616 >50 0.8613684725087757 11.909796399021548 >100 0.04007362509356242 1.4148057367017863 >500 8.054860121453463E-4 0.13545161823201493 >1k 4.0274300607267313E-4 0.10490000962227256 >5k 2.0137150303633656E-4 0.45532049931075275 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9866 0.4430513330608983 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018007661114678712 0.0 2 0.0 0.0 0.0 0.05730118599084798 0.0 3 0.0 0.0 0.0 0.09443918035952453 0.0 4 0.0 0.0 0.0 0.15371626931557417 0.0 5 0.0 0.0 0.0 0.2798597108894707 0.0 6 0.0 0.0 0.0 0.49415536884270467 0.0 7 0.0 0.0 0.0 0.6097905991925742 0.0 8 4.490688557276487E-5 0.0 0.0 0.8507609471760305 0.0 9 4.490688557276487E-5 0.0 0.0 0.9640610194761162 0.0 10 4.490688557276487E-5 0.0 0.0 1.136368739418815 0.0 11 4.490688557276487E-5 0.0 0.0 1.3361145664464733 0.0 12 4.490688557276487E-5 0.0 0.0 1.4853850540903437 0.0 13 4.490688557276487E-5 0.0 0.0 1.5792404449374222 0.0 14 4.490688557276487E-5 0.0 0.0 1.6368110722417069 0.0 15 4.490688557276487E-5 0.0 0.0 1.700174687784878 0.0 16 4.490688557276487E-5 0.0 0.0 1.8079512131595137 0.0 17 4.490688557276487E-5 0.0 0.0 1.9327923550518 0.0 18 4.490688557276487E-5 0.0 0.0 2.072991651809972 0.0 19 4.490688557276487E-5 0.0 0.0 2.1703048728461534 0.0 20 4.490688557276487E-5 0.0 0.0 2.2758809608277235 0.0 21 4.490688557276487E-5 0.0 0.0 2.4078622975260795 0.0 22 4.490688557276487E-5 0.0 0.0 2.5588841537072877 0.0 23 4.490688557276487E-5 0.0 0.0 2.724141492615063 0.0 24 4.490688557276487E-5 0.0 0.0 2.856437177512428 0.0 25 4.490688557276487E-5 0.0 0.0 2.9793024164395128 0.0 26 4.490688557276487E-5 0.0 0.0 3.1011347969984238 0.0 27 4.490688557276487E-5 0.0 0.0 3.2243143841245177 0.0 28 4.490688557276487E-5 0.0 0.0 3.358765599529376 0.0 29 4.490688557276487E-5 0.0 0.0 3.5083953422578285 0.0 30 4.490688557276487E-5 0.0 0.0 3.6852386576433767 0.0 31 4.490688557276487E-5 0.0 0.0 3.848250652272513 0.0 32 4.490688557276487E-5 0.0 0.0 4.009690905906603 0.0 33 4.490688557276487E-5 0.0 0.0 4.166595564097843 0.0 34 4.490688557276487E-5 0.0 0.0 4.335310733194721 0.0 35 4.490688557276487E-5 0.0 0.0 4.519384057157484 0.0 36 4.490688557276487E-5 0.0 0.0 4.700807874871454 0.0 37 4.490688557276487E-5 0.0 0.0 4.888922818535766 0.0 38 4.490688557276487E-5 0.0 0.0 5.081663171414073 0.0 39 4.490688557276487E-5 0.0 0.0 5.328830669606571 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7725 0.0 41.067963 1 TAAGGGA 3860 0.0 38.646374 4 GGCGATA 765 0.0 38.529415 8 AGGGCGA 1735 0.0 38.515846 6 CGTAAGG 345 0.0 38.47826 2 TTAGGGA 3450 0.0 38.217392 4 GCGAGAC 460 0.0 38.152172 21 TACGGGA 1240 0.0 38.10484 4 GGGCGAT 3575 0.0 37.762238 7 ACGGGAT 1385 0.0 37.689533 5 AAGGGAT 4490 0.0 37.433186 5 CACAACG 285 0.0 37.105263 12 TATGGGA 3505 0.0 36.911552 4 TAGGGAT 4380 0.0 36.88356 5 AGGGATC 2905 0.0 36.712566 6 TAGGGAG 3245 0.0 36.540833 5 CACGACC 450 0.0 36.5 27 ATGGGAC 2330 0.0 36.40558 5 GACCGAT 1085 0.0 36.29032 9 ATTGGGA 2660 0.0 36.287594 4 >>END_MODULE