SRR1548025_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548025_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1636568
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3900	0.23830357186502485	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2060	0.12587316872870544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTACC	25	3.8915332E-5	45.0	28
CGTACCG	25	3.8915332E-5	45.0	29
CGGTCTA	295	0.0	43.474575	31
CGGGTAT	140	0.0	43.39286	6
GACGTAG	60	3.6379788E-12	41.250004	1
CGTCATA	460	0.0	40.597824	38
CGACGGT	330	0.0	39.545452	28
AGGGCGA	1370	0.0	38.59489	6
GTTTGCG	105	0.0	38.57143	1
TAACGGG	500	0.0	37.8	3
CAGGCGT	500	0.0	37.8	34
TTAGGGA	2055	0.0	37.664234	4
GACCGAT	760	0.0	37.598682	9
TACGGGA	605	0.0	37.561985	4
CGTTTTT	2795	0.0	37.513416	1
AATGCGG	240	0.0	37.500004	2
CCCGTAC	30	1.1401331E-4	37.500004	27
AGCGAAC	30	1.1401331E-4	37.500004	27
TCGATAG	90	0.0	37.5	1
GGGCGAT	2525	0.0	37.425743	7