SRR1548024_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548024_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1322918
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5675	0.428975945599047	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3602	0.27227689093352725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1695	0.1281258551172484	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCC	20	7.0336723E-4	45.000004	44
CTAGACG	20	7.0336723E-4	45.000004	36
TCGTTGC	20	7.0336723E-4	45.000004	38
CACGGTC	45	3.8562575E-10	45.000004	28
GTCGAAG	80	0.0	45.000004	1
GCGAATC	20	7.0336723E-4	45.000004	35
CGTGATA	40	6.8157533E-9	45.000004	39
CGTTGAT	90	0.0	45.000004	25
TAGCGGC	20	7.0336723E-4	45.000004	44
TCGATAG	40	6.8157533E-9	45.000004	1
ATGTACG	45	3.8562575E-10	45.000004	1
CCCGTAG	20	7.0336723E-4	45.000004	29
TACGCGG	90	0.0	45.000004	2
TCTACCG	20	7.0336723E-4	45.000004	41
CTACGGA	45	3.8562575E-10	45.000004	11
TTGCGCA	20	7.0336723E-4	45.000004	2
ACTAAGA	20	7.0336723E-4	45.000004	30
CAAGATT	40	6.8157533E-9	45.000004	26
ACTCCGA	20	7.0336723E-4	45.000004	39
TGTCGAA	20	7.0336723E-4	45.000004	12