SRR1548023_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548023_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1552533
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4312	0.2777396680134979	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2175	0.14009364052165074	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGTA	35	1.2123019E-7	45.000004	39
CGTAACG	25	3.8914397E-5	45.0	27
TGTCGAT	25	3.8914397E-5	45.0	31
TCGTTAG	55	6.184564E-11	40.909092	1
TACGGGA	545	0.0	40.458714	4
CGTAAGG	190	0.0	40.263157	2
ACGGGAT	785	0.0	40.127388	5
CTACGTT	45	1.9290383E-8	40.0	30
TCCGTAC	45	1.9290383E-8	40.0	40
CTCACGA	175	0.0	39.857143	24
TACGCTA	40	3.459263E-7	39.375	44
CGTTAGG	225	0.0	39.0	2
CGACGGT	185	0.0	38.91892	28
CGTTTTT	2600	0.0	38.76923	1
CGACAAC	35	6.249704E-6	38.57143	27
TCGATAG	70	0.0	38.57143	1
TATCGGA	35	6.249704E-6	38.57143	38
CGGGTAT	130	0.0	38.076927	6
ATTGGGA	1485	0.0	38.0303	4
AACGGGA	670	0.0	37.94776	4