SRR1548019_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548019_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1109464
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15577	1.4040113063605488	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1388	0.12510545632846132	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1184	0.106718199058284	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	75	0.0	45.0	1
CTATGCG	35	1.2118835E-7	45.0	1
TCTTGCG	35	1.2118835E-7	45.0	1
GCCGACC	20	7.033181E-4	45.0	14
CTACGCG	40	6.8139343E-9	45.0	1
TCCGTCG	20	7.033181E-4	45.0	13
CCGGTAT	20	7.033181E-4	45.0	29
CCCGGTA	25	3.8907187E-5	45.0	28
GGCTCGC	20	7.033181E-4	45.0	8
CGTTTTT	6400	0.0	43.382812	1
TATAGCG	85	0.0	42.35294	1
GCGATCG	80	0.0	42.1875	9
CTCGTCC	300	0.0	41.25	37
TACGGGA	525	0.0	40.714287	4
GACCGAT	570	0.0	40.657894	9
CGACGGT	100	0.0	40.5	28
CGACATA	50	1.0822987E-9	40.5	44
TCGATAG	50	1.0822987E-9	40.5	1
CGTTTGG	150	0.0	40.5	2
ACGGGAT	695	0.0	40.467625	5