SRR1548018_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548018_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1591052
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4352	0.27352971493075023	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2441	0.1534205041695683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	30	2.166029E-6	45.000004	43
CGTTGAC	25	3.8914834E-5	45.000004	25
TAACGCG	25	3.8914834E-5	45.000004	1
TATAGCG	115	0.0	45.000004	1
CGGTCTA	200	0.0	45.000004	31
TTCGATC	25	3.8914834E-5	45.000004	38
TTATCCG	20	7.0341054E-4	45.0	1
CGTACCG	20	7.0341054E-4	45.0	45
GGCGAAC	20	7.0341054E-4	45.0	10
ATCGCCG	20	7.0341054E-4	45.0	11
CGACGGT	230	0.0	43.04348	28
CGTAAGG	215	0.0	42.906975	2
TCACGAC	230	0.0	41.08696	25
CACGACG	220	0.0	40.90909	26
ACGGTCT	220	0.0	40.90909	30
CGCATAC	50	1.0822987E-9	40.500004	26
TCGTAAG	95	0.0	40.263157	1
ATTAGCG	140	0.0	40.178574	1
AATCGAG	45	1.9290383E-8	40.0	1
GACGGTC	250	0.0	39.6	29