##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548018_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1591052 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.986069594205595 31.0 31.0 33.0 30.0 33.0 2 31.34513642545938 31.0 31.0 33.0 30.0 34.0 3 31.534362170438175 31.0 31.0 34.0 30.0 34.0 4 35.398772007451676 37.0 35.0 37.0 33.0 37.0 5 35.23507276946322 37.0 35.0 37.0 33.0 37.0 6 35.267404836548394 37.0 35.0 37.0 32.0 37.0 7 35.59447334216606 36.0 35.0 37.0 35.0 37.0 8 35.67900609156709 37.0 35.0 37.0 35.0 37.0 9 37.517101892332875 39.0 37.0 39.0 35.0 39.0 10 36.72959086189515 39.0 37.0 39.0 32.0 39.0 11 36.366170307444385 38.0 35.0 39.0 32.0 39.0 12 35.63196614566966 37.0 35.0 39.0 31.0 39.0 13 35.22181613171662 37.0 35.0 39.0 30.0 39.0 14 36.1831876016623 38.0 35.0 40.0 30.0 41.0 15 36.46863207487876 38.0 35.0 40.0 30.0 41.0 16 36.646530723068764 38.0 35.0 40.0 31.0 41.0 17 36.58926295306502 38.0 35.0 40.0 31.0 41.0 18 36.50874390026222 38.0 35.0 40.0 31.0 41.0 19 36.46575096225642 38.0 35.0 40.0 31.0 41.0 20 36.350258193949664 38.0 35.0 40.0 30.0 41.0 21 36.2010506256238 38.0 34.0 40.0 30.0 41.0 22 36.08475147261058 38.0 34.0 40.0 30.0 41.0 23 36.054049773357505 38.0 34.0 40.0 30.0 41.0 24 35.94532485424738 38.0 34.0 40.0 30.0 41.0 25 35.80368397764498 37.0 34.0 40.0 30.0 41.0 26 35.57753297818047 37.0 34.0 40.0 29.0 41.0 27 35.64075529900971 37.0 34.0 40.0 29.0 41.0 28 35.69638641603166 37.0 34.0 40.0 29.0 41.0 29 35.70994788353869 37.0 34.0 40.0 30.0 41.0 30 35.666494244059905 37.0 34.0 40.0 29.0 41.0 31 35.545552879478485 37.0 34.0 40.0 29.0 41.0 32 35.40399622388206 37.0 34.0 40.0 29.0 41.0 33 35.266627992045514 37.0 34.0 40.0 28.0 41.0 34 35.11302144744484 37.0 34.0 40.0 27.0 41.0 35 34.97429750881807 37.0 34.0 40.0 26.0 41.0 36 34.89790905639791 37.0 33.0 40.0 26.0 41.0 37 34.83380555758077 37.0 33.0 40.0 26.0 41.0 38 34.774417806583315 37.0 33.0 40.0 26.0 41.0 39 34.76718045670412 37.0 33.0 40.0 25.0 41.0 40 34.56038771831467 37.0 33.0 40.0 24.0 41.0 41 34.500284717281396 36.0 33.0 40.0 24.0 41.0 42 34.47331639694994 36.0 33.0 40.0 24.0 41.0 43 34.438985652260264 36.0 33.0 40.0 24.0 41.0 44 34.27862508579229 36.0 33.0 40.0 24.0 41.0 45 34.15238973961882 36.0 33.0 40.0 23.0 41.0 46 34.118442389060824 36.0 33.0 40.0 23.0 41.0 47 34.06649625530781 36.0 33.0 40.0 23.0 41.0 48 33.989143660923716 35.0 33.0 40.0 23.0 41.0 49 33.86848387104884 36.0 33.0 40.0 24.0 41.0 50 33.72272810693805 35.0 33.0 39.0 23.0 41.0 51 33.3838906585077 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 10.0 14 20.0 15 54.0 16 171.0 17 431.0 18 866.0 19 1705.0 20 2911.0 21 4575.0 22 6894.0 23 9837.0 24 14067.0 25 19397.0 26 24777.0 27 29992.0 28 34671.0 29 41665.0 30 50527.0 31 61168.0 32 76669.0 33 98354.0 34 155871.0 35 179761.0 36 130203.0 37 161773.0 38 218683.0 39 265969.0 40 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.37515052933531 24.6098179066429 29.821526889127448 12.193504674894347 2 30.737713160852064 27.509723126585428 28.886170910818755 12.86639280174375 3 29.728632376565944 26.201092107611817 29.97834137413485 14.091934141687387 4 26.544889796185167 28.77674645454705 29.5024926903709 15.175871058896881 5 23.466863433753264 33.60675829576909 28.74217813119873 14.184200139278918 6 22.476826653057223 41.75300367304148 25.6297091484125 10.140460525488797 7 90.75668174264575 3.314913654613426 4.715433562196584 1.2129710405442438 8 91.0321598539834 2.8304543157608926 4.476409319117162 1.6609765111385424 9 85.90555179843274 5.596485847099906 6.072083124875868 2.4258792295914904 10 43.42617337459744 35.503867881125196 10.982293476266019 10.087665268011353 11 39.64986688052936 23.443608379864393 21.691434346583264 15.215090393022981 12 37.91447419694642 21.956730515407415 24.11366818934893 16.015127098297228 13 25.430218496944164 32.021706393002866 25.047515731729696 17.50055937832327 14 18.975872567332807 34.95473435186279 27.668988819975716 18.400404260828683 15 18.4021641027446 26.38279578543002 39.25578799435845 15.959252117466935 16 22.191040896212066 22.94155062185271 37.82459655624078 17.042811925694444 17 22.437795873422115 22.33566219080206 26.80553495423154 28.421006981544288 18 23.454418837347866 25.193205501768638 31.30739912963247 20.04497653125102 19 27.95955129059264 26.963480766184887 25.550139153214353 19.52682879000812 20 30.50956222675312 26.5215090393023 24.882027740136714 18.08690099380787 21 26.26991449682349 27.245746839198215 27.988525830708237 18.49581283327006 22 25.194211125720596 23.472017256507016 27.65912113494719 23.6746504828252 23 22.558910708135247 28.65110631205014 26.91709636140114 21.872886618413478 24 22.67996269135138 25.566354839439565 32.44054876899058 19.313133700218472 25 21.38541040770509 26.27802233993609 30.910680480587686 21.42588677177113 26 20.024738349218 32.37656594504768 25.854717507661597 21.74397819807272 27 20.540560585072015 31.907253816971416 28.360543841433216 19.191641756523357 28 17.561965290889297 29.98946608910331 33.18867013774534 19.25989848226205 29 19.646246634302337 26.752111181784127 32.75254360008347 20.84909858383007 30 21.61104728192416 28.628542624628235 29.67319735621463 20.087212737232978 31 26.816848223690993 27.39036813378821 25.756103508873373 20.036680133647423 32 28.46713998034005 26.785171069204527 26.61396359138482 18.133725359070603 33 27.387665519417343 27.729766217571772 25.261650781998323 19.62091748101256 34 21.689737356164347 27.287794490689176 29.03135786888172 21.99111028426475 35 20.961351357466633 27.70952803553875 29.82184114661243 21.507279460382186 36 27.4462431146185 26.983153284744937 26.17903123216589 19.391572368470673 37 22.837845651807733 30.771275860248437 27.024509569768934 19.366368918174892 38 22.29110047943122 30.70169925307281 25.05977177364411 21.947428493851866 39 21.73455047352318 29.360385455660783 27.35240582960205 21.55265824121399 40 24.597121904249516 25.57867373285097 27.237010481115636 22.587193881783875 41 19.408228015174867 25.3199769712115 28.638347458159757 26.633447555453877 42 22.672671917699734 26.638538526710633 26.019514132787613 24.66927542280202 43 22.22108391177661 26.183053727973693 27.016841687135308 24.579020673114393 44 20.86374298263036 28.437788331242476 28.350424750416703 22.34804393571046 45 20.804725426950217 31.41782920985612 24.692970437169873 23.084474926023788 46 22.12473256688028 30.179340461531112 26.715405907537903 20.980521064050702 47 22.43006513929149 27.44599170863052 27.365981752953395 22.757961399124603 48 22.852112941626043 25.54731083584949 29.97167911545317 21.628897107071296 49 22.19179511417603 24.614846026402656 30.916714224299398 22.27664463512192 50 21.311622750230665 29.71071969992181 27.616947780462237 21.360709769385284 51 20.104056938428158 30.3302469058208 26.17375170641814 23.391944449332893 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1047.0 1 1607.5 2 2168.0 3 5316.5 4 8465.0 5 6602.5 6 4740.0 7 4675.5 8 4611.0 9 4904.0 10 5197.0 11 5315.5 12 5434.0 13 5332.0 14 5230.0 15 5190.5 16 5151.0 17 5794.0 18 6437.0 19 5992.0 20 5547.0 21 6840.5 22 8134.0 23 8188.5 24 8243.0 25 9324.5 26 12811.5 27 15217.0 28 17681.5 29 20146.0 30 24464.0 31 28782.0 32 32797.0 33 36812.0 34 42524.0 35 48236.0 36 50105.0 37 51974.0 38 60206.5 39 68439.0 40 81782.5 41 95126.0 42 110481.5 43 125837.0 44 130701.5 45 135566.0 46 133141.0 47 130716.0 48 127685.5 49 124655.0 50 116846.0 51 109037.0 52 102950.0 53 96863.0 54 91995.0 55 87127.0 56 82121.0 57 77115.0 58 73156.5 59 69198.0 60 64036.0 61 58874.0 62 52577.0 63 46280.0 64 39027.0 65 31774.0 66 26080.5 67 20387.0 68 16187.5 69 11988.0 70 9470.0 71 6952.0 72 6166.0 73 5380.0 74 4475.0 75 2763.0 76 1956.0 77 1581.0 78 1206.0 79 815.5 80 425.0 81 348.5 82 272.0 83 199.5 84 127.0 85 118.5 86 110.0 87 73.0 88 36.0 89 25.0 90 14.0 91 24.5 92 35.0 93 21.5 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1591052.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.305006837474437 #Duplication Level Percentage of deduplicated Percentage of total 1 79.19582270180923 15.288758987578408 2 6.566671849874234 2.5353928992254597 3 2.1229740192316764 1.2295208387114431 4 1.104039818462584 0.8525398497705687 5 0.7056806729482892 0.6811585108170143 6 0.5488746023571699 0.6357616770852735 7 0.42086111640474866 0.5687308710874558 8 0.3462099065478682 0.5346867690486385 9 0.3033510210722997 0.5270574182360038 >10 5.612914803631479 28.776633977941124 >50 2.562769273240858 34.89077755596487 >100 0.5071731188394918 12.74686921259539 >500 0.0016606847375219076 0.2181971626279756 >1k 9.964108425131444E-4 0.5139142693103803 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4352 0.27352971493075023 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2441 0.1534205041695683 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02224942993692224 0.0 2 0.0 0.0 0.0 0.09842544429723227 0.0 3 0.0 0.0 0.0 0.14499840357197627 0.0 4 0.0 0.0 0.0 0.2861000143301413 0.0 5 0.0 0.0 0.0 0.4910587460372131 0.0 6 0.0 0.0 0.0 0.752395270550554 0.0 7 0.0 0.0 0.0 0.8559116861045396 0.0 8 0.0 0.0 0.0 1.1134771207980632 0.0 9 0.0 0.0 0.0 1.2008407016238314 0.0 10 0.0 0.0 0.0 1.3738080213594528 0.0 11 0.0 0.0 0.0 1.688254060835221 0.0 12 0.0 0.0 0.0 1.9195475697840172 0.0 13 0.0 0.0 0.0 2.03035475898965 0.0 14 0.0 0.0 0.0 2.082018689521147 0.0 15 0.0 0.0 0.0 2.1545493170556336 0.0 16 0.0 0.0 0.0 2.295085264340826 0.0 17 0.0 0.0 0.0 2.44611741162451 0.0 18 0.0 0.0 0.0 2.6168849289652383 0.0 19 0.0 0.0 0.0 2.727126454697898 0.0 20 0.0 0.0 0.0 2.8479898834230433 0.0 21 0.0 0.0 0.0 3.002290308550569 0.0 22 0.0 0.0 0.0 3.1836797288837824 0.0 23 0.0 0.0 0.0 3.3531902162845713 0.0 24 0.0 0.0 0.0 3.48926370728298 0.0 25 0.0 0.0 0.0 3.6071731156492683 0.0 26 0.0 0.0 0.0 3.7246425635365785 0.0 27 0.0 0.0 0.0 3.8472658341776382 0.0 28 0.0 0.0 0.0 3.9715860952376163 0.0 29 0.0 0.0 0.0 4.111493527552839 0.0 30 0.0 0.0 0.0 4.284963659264436 0.0 31 6.285149699695547E-5 0.0 0.0 4.440521114331901 0.0 32 6.285149699695547E-5 0.0 0.0 4.58463959694592 0.0 33 6.285149699695547E-5 0.0 0.0 4.733597644828705 0.0 34 6.285149699695547E-5 0.0 0.0 4.891040644806078 0.0 35 6.285149699695547E-5 0.0 0.0 5.0764525609470965 0.0 36 6.285149699695547E-5 0.0 0.0 5.241186334576117 0.0 37 6.285149699695547E-5 0.0 0.0 5.415913496227653 0.0 38 6.285149699695547E-5 0.0 0.0 5.604782244703505 0.0 39 6.285149699695547E-5 0.0 0.0 5.880826019514132 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAT 30 2.166029E-6 45.000004 43 CGTTGAC 25 3.8914834E-5 45.000004 25 TAACGCG 25 3.8914834E-5 45.000004 1 TATAGCG 115 0.0 45.000004 1 CGGTCTA 200 0.0 45.000004 31 TTCGATC 25 3.8914834E-5 45.000004 38 TTATCCG 20 7.0341054E-4 45.0 1 CGTACCG 20 7.0341054E-4 45.0 45 GGCGAAC 20 7.0341054E-4 45.0 10 ATCGCCG 20 7.0341054E-4 45.0 11 CGACGGT 230 0.0 43.04348 28 CGTAAGG 215 0.0 42.906975 2 TCACGAC 230 0.0 41.08696 25 CACGACG 220 0.0 40.90909 26 ACGGTCT 220 0.0 40.90909 30 CGCATAC 50 1.0822987E-9 40.500004 26 TCGTAAG 95 0.0 40.263157 1 ATTAGCG 140 0.0 40.178574 1 AATCGAG 45 1.9290383E-8 40.0 1 GACGGTC 250 0.0 39.6 29 >>END_MODULE