##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548009_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3391592 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.806509745275964 31.0 31.0 31.0 30.0 33.0 2 31.144937539656894 31.0 31.0 33.0 30.0 34.0 3 31.274935192676477 31.0 31.0 34.0 28.0 34.0 4 35.15633661124333 35.0 35.0 37.0 32.0 37.0 5 34.9787987470191 35.0 35.0 37.0 32.0 37.0 6 35.01174846502763 36.0 35.0 37.0 32.0 37.0 7 35.516359279064226 35.0 35.0 37.0 35.0 37.0 8 35.62742865297477 37.0 35.0 37.0 35.0 37.0 9 37.426454007439574 39.0 37.0 39.0 35.0 39.0 10 36.50583590243166 38.0 35.0 39.0 32.0 39.0 11 36.03099930652036 38.0 35.0 39.0 31.0 39.0 12 35.6385473252679 37.0 35.0 39.0 30.0 39.0 13 35.42257765674645 37.0 35.0 39.0 30.0 39.0 14 36.41897285994306 38.0 35.0 40.0 30.0 41.0 15 36.628917924089926 38.0 35.0 40.0 30.0 41.0 16 36.74396890899613 38.0 35.0 40.0 31.0 41.0 17 36.67272272136507 38.0 35.0 40.0 31.0 41.0 18 36.575465739982874 38.0 35.0 40.0 31.0 41.0 19 36.524916322482184 38.0 35.0 40.0 30.0 41.0 20 36.40859012522733 38.0 35.0 40.0 30.0 41.0 21 36.28096274551892 38.0 34.0 40.0 30.0 41.0 22 36.16113819115035 38.0 34.0 40.0 30.0 41.0 23 36.09728469698006 38.0 34.0 40.0 30.0 41.0 24 36.001075895921446 38.0 34.0 40.0 30.0 41.0 25 35.83551234936278 38.0 34.0 40.0 29.0 41.0 26 35.58572080604035 38.0 34.0 40.0 29.0 41.0 27 35.653523772906645 38.0 34.0 40.0 29.0 41.0 28 35.692457701280105 38.0 34.0 40.0 29.0 41.0 29 35.71205941044796 38.0 34.0 40.0 29.0 41.0 30 35.63976003009796 38.0 34.0 40.0 29.0 41.0 31 35.5714741041965 38.0 34.0 40.0 29.0 41.0 32 35.451485320168224 38.0 34.0 40.0 28.0 41.0 33 35.30799135037469 38.0 34.0 40.0 27.0 41.0 34 35.1740026512623 38.0 34.0 40.0 26.0 41.0 35 35.03850787476796 38.0 34.0 40.0 26.0 41.0 36 34.96257273870206 38.0 34.0 40.0 25.0 41.0 37 34.8933866455635 38.0 33.0 40.0 25.0 41.0 38 34.84823469332396 38.0 33.0 40.0 25.0 41.0 39 34.83478761596324 37.0 33.0 40.0 25.0 41.0 40 34.648306164184845 37.0 33.0 40.0 24.0 41.0 41 34.6018987543313 37.0 33.0 40.0 24.0 41.0 42 34.57732121080602 37.0 33.0 40.0 24.0 41.0 43 34.539646573054775 37.0 33.0 40.0 24.0 41.0 44 34.39906451011796 37.0 33.0 40.0 24.0 41.0 45 34.30220586674341 37.0 33.0 40.0 23.0 41.0 46 34.26166060068546 37.0 33.0 40.0 23.0 41.0 47 34.209246866958054 37.0 33.0 40.0 23.0 41.0 48 34.12744516439477 37.0 33.0 40.0 23.0 41.0 49 33.986677053136106 36.0 33.0 40.0 23.0 41.0 50 33.863513064071384 36.0 33.0 40.0 23.0 41.0 51 33.54417070213634 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 11.0 14 33.0 15 97.0 16 310.0 17 847.0 18 1908.0 19 3542.0 20 6141.0 21 9568.0 22 14638.0 23 21680.0 24 31360.0 25 44801.0 26 58406.0 27 68290.0 28 78545.0 29 92618.0 30 110644.0 31 133826.0 32 162251.0 33 201558.0 34 285106.0 35 335556.0 36 293681.0 37 355238.0 38 479963.0 39 600901.0 40 70.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.26319203489099 26.191092560661776 30.06871109496661 13.477004309480623 2 29.32743679074606 27.63301128201741 29.38729068826675 13.652261238969782 3 27.225709932090886 27.19475101958019 32.143724834826834 13.435814213502095 4 24.35337151402645 29.672466499508193 31.237011999084796 14.737149987380556 5 22.560260786085117 33.85262732073905 29.794857400300508 13.792254492875323 6 21.378780230640952 41.44095162389816 26.874665348898098 10.305602796562795 7 91.1642968847668 2.5632505324932953 5.183642372077774 1.0888102106621316 8 91.94133610410687 1.8598640402501243 4.7428169426039455 1.4559829130390685 9 86.86578456370931 5.249127843207556 6.085608174568168 1.799479418514963 10 39.46488846535786 41.650174903113346 10.3675206215842 8.517416009944592 11 27.656510570846965 25.967097457477195 29.78760416936943 16.58878780230641 12 28.688474321203728 24.273998759284726 29.095097523522877 17.94242939598867 13 22.29828941688741 30.519089560300884 29.944639567495145 17.237981455316557 14 17.478812309971246 34.261402904594654 29.96179965042965 18.297985135004446 15 16.27828465216335 28.782029206343218 38.27426765955339 16.665418481940044 16 20.568836110003797 26.63430624910072 36.526091581770444 16.270766059125037 17 20.097611976912315 26.206513047559966 29.337933336321115 24.357941639206604 18 20.777882481147497 28.11275648721898 32.158054388617494 18.95130664301602 19 24.258224456243557 28.55305119247834 28.418011364574514 18.77071298670359 20 25.84337974614871 29.397964141913295 27.251273148421156 17.50738296351684 21 23.307874296200723 28.298008722747316 30.51805759655053 17.87605938450144 22 22.66808625565811 25.743397201078434 29.968787519253492 21.619729024009963 23 19.287314040132188 30.29114351018637 29.230697560319758 21.190844889361692 24 19.616009236960107 28.350815782086997 33.96673302684993 18.06644195410297 25 19.682674095233153 29.721204673203616 31.015110308079507 19.58101092348372 26 19.02413379911263 33.72843785455326 27.843856218554592 19.40357212777952 27 18.68635732128157 32.71655317031058 30.185853722971395 18.411235785436457 28 17.1037966830916 31.239046441906925 33.356577088281846 18.300579786719627 29 18.041497916022916 27.887523027533973 33.174391259326 20.896587797117107 30 19.37609240734145 29.393187623983074 31.650976886370767 19.579743082304713 31 22.246720714048152 29.28312131883788 29.07911682773164 19.39104113938233 32 22.912130940278193 29.76322034018243 28.828732937216508 18.495915782322875 33 22.23357054740075 29.94363708842337 28.637141495793127 19.18565086838275 34 19.154927833300704 30.50310886450965 29.38820471330278 20.95375858888687 35 18.830419460831376 29.88584711840339 29.998095289763626 21.285638131001605 36 22.709217382279473 29.323397389780375 27.97296962606351 19.994415601876643 37 19.01107208650097 31.817565320356927 29.66034829661115 19.511014296530952 38 19.465519437479507 32.15310096261579 27.166475212820412 21.214904387084296 39 19.474128963625343 31.0393467138736 28.29367447499581 21.192849847505244 40 21.3876846035726 29.283327711587955 27.959819459416106 21.36916822542334 41 17.79199856586523 29.102881478668426 29.083215198054486 24.021904757411857 42 20.189869536194212 29.39528103616237 27.92314051926057 22.491708908382847 43 20.43762929031558 29.30499895034544 28.504313018782916 21.753058740556057 44 19.346194943259682 31.380838261205945 28.691924028597782 20.581042766936587 45 18.454873109737253 32.070602831944406 27.498708571078122 21.97581548724021 46 20.20885766920078 31.257356427306114 27.533677399875927 21.00010850361718 47 19.627508261606938 29.795565032586467 28.889943129951952 21.686983575854644 48 20.731444112381443 28.351169598229976 29.49526358123265 21.422122708155932 49 20.077621364833977 28.23314242986774 29.796921327801222 21.892314877497057 50 18.60727941332566 31.630691427506612 28.362108413983755 21.399920745183973 51 18.032888389877083 31.8410351245079 27.746792656663892 22.379283828951124 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2537.0 1 2672.5 2 2808.0 3 16146.5 4 29485.0 5 22246.0 6 15007.0 7 14393.5 8 13780.0 9 15331.0 10 16882.0 11 18349.5 12 19817.0 13 20579.0 14 21341.0 15 21093.0 16 20845.0 17 20180.5 18 19516.0 19 19510.0 20 19504.0 21 20775.0 22 22046.0 23 24446.5 24 26847.0 25 31462.0 26 43570.0 27 51063.0 28 58603.0 29 66143.0 30 76641.0 31 87139.0 32 101123.5 33 115108.0 34 123649.5 35 132191.0 36 142784.5 37 153378.0 38 167175.0 39 180972.0 40 204337.5 41 227703.0 42 254449.5 43 281196.0 44 284130.0 45 287064.0 46 293694.0 47 300324.0 48 289905.0 49 279486.0 50 259641.0 51 239796.0 52 213226.5 53 186657.0 54 163980.5 55 141304.0 56 127626.0 57 113948.0 58 104764.0 59 95580.0 60 82899.5 61 70219.0 62 58655.5 63 47092.0 64 38732.0 65 30372.0 66 23168.0 67 15964.0 68 12935.0 69 9906.0 70 7585.0 71 5264.0 72 4239.0 73 3214.0 74 2486.0 75 1524.0 76 1290.0 77 861.0 78 432.0 79 363.0 80 294.0 81 212.5 82 131.0 83 92.0 84 53.0 85 40.5 86 28.0 87 21.5 88 15.0 89 9.5 90 4.0 91 7.5 92 11.0 93 5.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3391592.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.38741383617088 #Duplication Level Percentage of deduplicated Percentage of total 1 76.43401577962749 16.34725926639308 2 8.269134435698936 3.53710800486449 3 3.073841445772833 1.972245572025522 4 1.742894813567296 1.491040506027186 5 1.096888812082575 1.1729807478137955 6 0.769795673959285 0.9878363188956782 7 0.5573853733216461 0.8344722151821051 8 0.4308178359214765 0.7371263475884946 9 0.3745325278505345 0.720925395142192 >10 4.672750927422274 24.59930963979491 >50 2.010633174906105 30.76565339028909 >100 0.5637579393698964 15.590734186865213 >500 0.002414857139864031 0.34889438398776945 >1k 9.943529399440128E-4 0.3382610650748716 >5k 0.0 0.0 >10k+ 1.420504199920018E-4 0.5561529600557391 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18306 0.5397465261151696 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.845403574486554E-5 0.0 0.0 0.048915081766910645 0.0 2 8.845403574486554E-5 0.0 0.0 0.157890453804585 0.0 3 8.845403574486554E-5 0.0 0.0 0.24377932251284942 0.0 4 8.845403574486554E-5 0.0 0.0 0.4024658626391382 0.0 5 8.845403574486554E-5 0.0 0.0 0.739151407362678 0.0 6 8.845403574486554E-5 0.0 0.0 1.2679001483669026 0.0 7 8.845403574486554E-5 0.0 0.0 1.5691745941139146 0.0 8 8.845403574486554E-5 0.0 0.0 2.1578067173174134 0.0 9 8.845403574486554E-5 0.0 0.0 2.417301373514267 0.0 10 8.845403574486554E-5 0.0 0.0 2.74750028894985 0.0 11 8.845403574486554E-5 0.0 0.0 3.1703105798103075 0.0 12 8.845403574486554E-5 0.0 0.0 3.4981507209593605 0.0 13 8.845403574486554E-5 0.0 0.0 3.675972817485122 0.0 14 8.845403574486554E-5 0.0 0.0 3.7791691925207984 0.0 15 8.845403574486554E-5 0.0 0.0 3.88227711352073 0.0 16 8.845403574486554E-5 0.0 0.0 4.066674293370193 0.0 17 8.845403574486554E-5 0.0 0.0 4.307210301239064 0.0 18 8.845403574486554E-5 0.0 0.0 4.5764643860464345 0.0 19 8.845403574486554E-5 0.0 0.0 4.764783028147254 0.0 20 8.845403574486554E-5 0.0 0.0 4.951833829069063 0.0 21 8.845403574486554E-5 0.0 0.0 5.181283597791244 0.0 22 8.845403574486554E-5 0.0 0.0 5.4595894789231725 0.0 23 8.845403574486554E-5 0.0 0.0 5.745413953093415 0.0 24 8.845403574486554E-5 0.0 0.0 5.967639975563098 0.0 25 8.845403574486554E-5 0.0 0.0 6.156961096735692 0.0 26 8.845403574486554E-5 0.0 0.0 6.341830031442461 0.0 27 8.845403574486554E-5 0.0 0.0 6.541854090940184 0.0 28 8.845403574486554E-5 0.0 0.0 6.7478045708328125 0.0 29 8.845403574486554E-5 0.0 0.0 6.978758058162656 0.0 30 8.845403574486554E-5 0.0 0.0 7.245535429969171 0.0 31 8.845403574486554E-5 0.0 0.0 7.490169808160887 0.0 32 8.845403574486554E-5 0.0 0.0 7.720622055954844 0.0 33 8.845403574486554E-5 0.0 0.0 7.94762459635475 0.0 34 8.845403574486554E-5 0.0 0.0 8.178637053041758 0.0 35 1.1793871432648739E-4 0.0 0.0 8.443586374776212 0.0 36 1.1793871432648739E-4 0.0 0.0 8.693586964469782 0.0 37 1.1793871432648739E-4 0.0 0.0 8.955882665131892 0.0 38 1.1793871432648739E-4 0.0 0.0 9.231151624369913 0.0 39 1.1793871432648739E-4 0.0 0.0 9.560377545412303 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10240 0.0 42.033695 1 TATAGCG 290 0.0 41.89655 1 TAACGCG 70 0.0 41.785717 1 CGACCCG 175 0.0 39.857143 32 AGGGCGA 2565 0.0 39.385963 6 TAATGCG 200 0.0 39.375004 1 TACGGGA 1725 0.0 39.0 4 ACGGGAT 2250 0.0 38.8 5 CGTTCGA 35 6.251894E-6 38.57143 14 ACGGGTC 70 0.0 38.57143 5 GGGCGAT 5675 0.0 38.220264 7 TAAACGG 330 0.0 38.181816 2 CGTTAGG 520 0.0 38.07692 2 GCGTAAG 280 0.0 37.76786 1 TAGGGAT 7550 0.0 37.728474 5 TAGGGAC 5060 0.0 37.707508 5 ATAGGGA 6380 0.0 37.69984 4 TAAGGGA 6190 0.0 37.657513 4 TTAGGGA 5775 0.0 37.51948 4 CCGCTCG 30 1.1403914E-4 37.500004 19 >>END_MODULE