##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548005_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2780983 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.92340262418001 31.0 31.0 33.0 30.0 33.0 2 31.25505657531887 31.0 31.0 33.0 30.0 34.0 3 31.32874850367658 31.0 31.0 34.0 30.0 34.0 4 35.28157633469892 37.0 35.0 37.0 33.0 37.0 5 35.1657838253596 37.0 35.0 37.0 32.0 37.0 6 35.21760039525592 37.0 35.0 37.0 32.0 37.0 7 35.571438228856486 36.0 35.0 37.0 35.0 37.0 8 35.66321692725198 37.0 35.0 37.0 35.0 37.0 9 37.50787976769365 39.0 37.0 39.0 35.0 39.0 10 36.67920659709175 39.0 37.0 39.0 32.0 39.0 11 36.29004168669855 38.0 35.0 39.0 31.0 39.0 12 35.905894066954026 37.0 35.0 39.0 31.0 39.0 13 35.75330917161306 37.0 35.0 39.0 30.0 39.0 14 36.785136766388 39.0 35.0 40.0 31.0 41.0 15 36.939050328606825 39.0 35.0 41.0 31.0 41.0 16 37.02511665839022 39.0 35.0 41.0 31.0 41.0 17 36.95464049942053 39.0 35.0 41.0 31.0 41.0 18 36.82791696317453 38.0 35.0 40.0 31.0 41.0 19 36.747544303578984 38.0 35.0 40.0 31.0 41.0 20 36.60313529424668 38.0 35.0 40.0 31.0 41.0 21 36.48449163479245 38.0 35.0 40.0 30.0 41.0 22 36.37831083469406 38.0 35.0 40.0 30.0 41.0 23 36.283509823684646 38.0 35.0 40.0 30.0 41.0 24 36.17117040988744 38.0 34.0 40.0 30.0 41.0 25 36.01608711739698 38.0 34.0 40.0 30.0 41.0 26 35.80853460808642 38.0 34.0 40.0 29.0 41.0 27 35.88171808313823 38.0 34.0 40.0 30.0 41.0 28 35.89587674574062 38.0 34.0 40.0 30.0 41.0 29 35.879363160436434 38.0 34.0 40.0 30.0 41.0 30 35.78421011563177 38.0 34.0 40.0 29.0 41.0 31 35.67584519574553 38.0 34.0 40.0 29.0 41.0 32 35.50551765329022 38.0 34.0 40.0 28.0 41.0 33 35.30453008882111 38.0 34.0 40.0 27.0 41.0 34 35.05670944410664 38.0 34.0 40.0 25.0 41.0 35 34.85268518362032 38.0 33.0 40.0 24.0 41.0 36 34.76046779142483 38.0 33.0 40.0 24.0 41.0 37 34.706936719857694 38.0 33.0 40.0 24.0 41.0 38 34.618590620654636 38.0 33.0 40.0 24.0 41.0 39 34.57316351807976 38.0 33.0 40.0 23.0 41.0 40 34.4199504276006 37.0 33.0 40.0 23.0 41.0 41 34.32599875655479 37.0 33.0 40.0 23.0 41.0 42 34.28949331944855 37.0 33.0 40.0 23.0 41.0 43 34.251292079095776 37.0 33.0 40.0 23.0 41.0 44 34.11091509728754 37.0 33.0 40.0 23.0 41.0 45 33.98231200981811 37.0 33.0 40.0 23.0 41.0 46 33.93177340530309 37.0 33.0 40.0 23.0 41.0 47 33.87487302151793 37.0 33.0 40.0 22.0 41.0 48 33.77226002460281 36.0 33.0 40.0 22.0 41.0 49 33.64378494942256 36.0 32.0 40.0 22.0 41.0 50 33.53406115751157 36.0 32.0 40.0 21.0 41.0 51 33.1966272357652 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 8.0 13 12.0 14 29.0 15 91.0 16 261.0 17 697.0 18 1597.0 19 3087.0 20 5276.0 21 8533.0 22 12856.0 23 18895.0 24 28056.0 25 40511.0 26 52853.0 27 59777.0 28 64746.0 29 72776.0 30 85936.0 31 102213.0 32 123854.0 33 157291.0 34 224568.0 35 259755.0 36 242628.0 37 299859.0 38 411504.0 39 503267.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.80004444471613 25.14912892311819 29.179682148362645 14.871144483803029 2 32.10041197662841 26.09512535675335 28.88273678767544 12.921725878942805 3 27.961695558728692 26.085668269097656 32.5063835341676 13.446252638006056 4 24.53517335417009 28.559793425562113 32.47261849497102 14.432414725296775 5 22.5456610126707 32.390201594184504 31.154595335534236 13.909542057610564 6 21.426632237593683 41.31862726237449 27.438535222976913 9.816205277054912 7 89.52107941688244 2.7092578415617785 6.757754362396318 1.0119083791594554 8 90.28268062048564 2.1476938190560677 6.508993402692501 1.0606321577657971 9 85.27610560726188 5.185504550009835 7.744311993277197 1.7940778494510752 10 38.50814622023939 38.38441299353502 13.43305586549792 9.67438492072767 11 29.912480586900386 25.162253778609937 28.34569646775978 16.579569166729893 12 29.596189548803427 23.131029567602535 29.307802313067 17.96497857052704 13 23.931358084533418 27.287940990649712 30.326794518341178 18.453906406475696 14 19.82367385920734 29.65203311203269 30.800404029798095 19.72388899896188 15 19.34952497012747 26.90789551752024 35.82956098616928 17.91301852618301 16 23.26400413091342 25.25038808219971 33.96662259352179 17.51898519336508 17 22.887554508603614 25.24118270410139 29.744050934507687 22.12721185278731 18 23.238905092192223 25.864883028770763 31.821086284957513 19.075125594079502 19 25.455711164002082 27.354176562747778 28.152347569186865 19.037764704063274 20 27.020481606683678 27.065213990880206 28.4678475201035 17.446456882332615 21 25.26692899597013 26.326913900588387 30.58947142071706 17.81668568272442 22 24.84344564493922 24.066526116844294 30.16192475825994 20.928103479956548 23 22.049289765525355 27.467337988042356 30.109497253309353 20.373874993122936 24 21.57492512539631 26.361613860998073 33.332566218491806 18.730894795113816 25 21.522425703429327 28.292298083087886 30.390872579947448 19.79440363353534 26 20.881896796923964 30.41794933661946 28.24486881077662 20.455285055679955 27 20.057907581599743 29.615786935770554 30.259480190997213 20.066825291632494 28 19.047077957686184 29.063572125395947 32.558882956134575 19.33046696078329 29 20.39839869571299 26.843565746356596 32.161038021447816 20.596997536482604 30 21.17201004105383 27.75306429417224 31.439854181057562 19.635071483716366 31 23.89820433997619 27.491106561960287 29.016969898773205 19.593719199290323 32 24.574583879153522 26.950434432716776 29.030957758461668 19.444023929668035 33 23.76709961909152 27.797796678368762 28.280359858366626 20.154743844173083 34 21.011095716874213 28.148464050301637 30.05534373996533 20.78509649285882 35 21.06208488149694 28.361230543300696 30.161673048702564 20.4150115264998 36 23.55469271117443 28.959759912232474 27.852489569335738 19.633057807257362 37 21.774207177821655 29.988137288145957 28.548430536971996 19.689224997060393 38 21.551839763134115 30.235603741554694 27.703153884795412 20.509402610515778 39 21.338282182954732 29.341099891657013 28.37230576382524 20.948312161563017 40 23.23192914160209 27.762305630778755 27.875574931597928 21.130190296021226 41 19.922487839731488 27.665685119254597 29.23279286496897 23.179034176044947 42 21.31613174190565 28.08985168194124 27.900278426728963 22.693738149424142 43 21.164602588365337 27.89948733954864 28.606647361742233 22.32926271034379 44 21.06895295656248 28.824627838429794 28.515384667939358 21.591034537068367 45 20.512279291171502 29.82416649076963 27.443245787550662 22.220308430508204 46 21.52461917242932 29.99295572824429 27.508510479927423 20.97391461939897 47 20.73479053989183 28.77719856611853 28.939119728527647 21.548891165462 48 21.47010607400333 27.881580002466755 29.77123556670429 20.877078356825628 49 21.762268953100396 27.526777402091273 29.276446493919593 21.43450715088873 50 20.624361961220185 29.47317549226299 28.76882023370873 21.133642312808096 51 19.91547593063316 29.85706852576949 28.263027857415885 21.96442768618147 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1850.0 1 2459.5 2 3069.0 3 18117.5 4 33166.0 5 25767.0 6 18368.0 7 17206.5 8 16045.0 9 16571.5 10 17098.0 11 17226.0 12 17354.0 13 17250.5 14 17147.0 15 16592.5 16 16038.0 17 15463.5 18 14889.0 19 14642.5 20 14396.0 21 15703.0 22 17010.0 23 18163.5 24 19317.0 25 21955.0 26 29708.5 27 34824.0 28 41941.5 29 49059.0 30 55331.0 31 61603.0 32 69621.0 33 77639.0 34 86518.5 35 95398.0 36 105879.5 37 116361.0 38 123678.0 39 130995.0 40 145983.5 41 160972.0 42 175977.0 43 190982.0 44 196764.5 45 202547.0 46 202601.0 47 202655.0 48 199211.0 49 195767.0 50 190304.0 51 184841.0 52 173719.5 53 162598.0 54 153633.0 55 144668.0 56 136301.0 57 127934.0 58 119407.0 59 110880.0 60 100388.0 61 89896.0 62 80455.0 63 71014.0 64 59007.5 65 47001.0 66 39154.0 67 31307.0 68 26637.5 69 21968.0 70 18773.5 71 15579.0 72 12730.5 73 9882.0 74 8281.0 75 5280.5 76 3881.0 77 2867.0 78 1853.0 79 1421.0 80 989.0 81 729.0 82 469.0 83 357.5 84 246.0 85 162.5 86 79.0 87 59.0 88 39.0 89 30.5 90 22.0 91 17.0 92 12.0 93 7.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2780983.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.453111278719813 #Duplication Level Percentage of deduplicated Percentage of total 1 75.00431929582547 16.840803275338008 2 6.559966645275432 2.945833221421191 3 2.6891349748655826 1.8113834050246302 4 1.5517232995982602 1.3936406367864809 5 1.101557642925694 1.2366698168267456 6 0.8609185551516132 1.159818007244031 7 0.7391650217904082 1.1617588141318174 8 0.6088616550853115 1.0936670795980816 9 0.5295888739946208 1.070182612779583 >10 8.998098259642271 49.989425898643425 >50 1.2969615986784537 18.327459579145234 >100 0.05838506225950439 2.0170573906652565 >500 3.297787268401443E-4 0.040206752389452934 >1k 8.244468171003607E-4 0.24890423233360223 >5k 0.0 0.0 >10k+ 1.6488936342007213E-4 0.6631892776724404 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17913 0.6441247573250178 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01636112122943578 0.0 2 0.0 0.0 0.0 0.05397372080303979 0.0 3 0.0 0.0 0.0 0.09600921688482095 0.0 4 0.0 0.0 0.0 0.1459196262616492 0.0 5 0.0 0.0 0.0 0.2682864296545502 0.0 6 0.0 0.0 0.0 0.5005064755879486 0.0 7 0.0 0.0 0.0 0.6145668635874437 0.0 8 0.0 0.0 0.0 0.8362510666192494 0.0 9 0.0 0.0 0.0 0.9687222108153843 0.0 10 0.0 0.0 0.0 1.160273183978471 0.0 11 0.0 0.0 0.0 1.3941113627807147 0.0 12 0.0 0.0 0.0 1.5653457788127436 0.0 13 0.0 0.0 0.0 1.674120266107344 0.0 14 0.0 0.0 0.0 1.7515389342545424 0.0 15 0.0 0.0 0.0 1.8182419669591652 0.0 16 0.0 0.0 0.0 1.9219822631062469 0.0 17 0.0 0.0 0.0 2.0449603611384894 0.0 18 0.0 0.0 0.0 2.1785821775969145 0.0 19 0.0 0.0 0.0 2.2763174028751703 0.0 20 0.0 0.0 0.0 2.3741964621862124 0.0 21 0.0 0.0 0.0 2.50246046092335 0.0 22 0.0 0.0 0.0 2.6433458960374803 0.0 23 0.0 0.0 0.0 2.804547888282668 0.0 24 0.0 0.0 0.0 2.9324163434296433 0.0 25 0.0 0.0 0.0 3.0499287482160087 0.0 26 0.0 0.0 0.0 3.163377841576162 0.0 27 0.0 0.0 0.0 3.29038329252642 0.0 28 0.0 0.0 0.0 3.4175685360176598 0.0 29 0.0 0.0 0.0 3.5606833986399775 0.0 30 0.0 0.0 0.0 3.728753465950709 0.0 31 0.0 0.0 0.0 3.876542934638579 0.0 32 0.0 0.0 0.0 4.022390643883836 0.0 33 0.0 0.0 0.0 4.168849647768433 0.0 34 0.0 0.0 0.0 4.318760668439901 0.0 35 0.0 0.0 0.0 4.492512180045689 0.0 36 0.0 0.0 0.0 4.65378608930727 0.0 37 0.0 0.0 0.0 4.821316778995053 0.0 38 0.0 0.0 0.0 5.011681121387653 0.0 39 0.0 0.0 0.0 5.267418031681603 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 12715 0.0 42.062527 1 TTTACGG 300 0.0 39.0 2 AGGGCGA 2595 0.0 38.930634 6 GGGCGAT 5015 0.0 38.35992 7 AAGGGAT 5590 0.0 38.076923 5 TAAGGGA 4155 0.0 37.906136 4 ACGGGAT 1505 0.0 37.67442 5 TACGGGA 1365 0.0 37.417583 4 TTAGGGA 4610 0.0 37.386116 4 AGGGATT 5645 0.0 37.34721 6 GACCGAT 1495 0.0 37.324413 9 TAGGGAC 3055 0.0 37.045826 5 ATAGGGA 4305 0.0 36.898956 4 CACGACC 465 0.0 36.774193 27 TAGGGAT 5230 0.0 36.73996 5 TGTTACG 135 0.0 36.666664 1 GGCGATA 1295 0.0 36.660233 8 AGGGACC 3565 0.0 36.605892 6 GGCACCG 1290 0.0 36.453487 8 AGGGATC 3900 0.0 36.346153 6 >>END_MODULE