##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1548004_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2376973 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.89865345546626 31.0 31.0 31.0 30.0 33.0 2 31.251951536681318 31.0 31.0 33.0 30.0 34.0 3 31.46462117996292 31.0 31.0 34.0 30.0 34.0 4 35.34538171026764 37.0 35.0 37.0 33.0 37.0 5 35.1601684158802 37.0 35.0 37.0 32.0 37.0 6 35.18335336581442 37.0 35.0 37.0 32.0 37.0 7 35.49707001299552 35.0 35.0 37.0 35.0 37.0 8 35.56806787456147 37.0 35.0 37.0 35.0 37.0 9 37.415439300320195 39.0 37.0 39.0 35.0 39.0 10 36.59153006786362 39.0 35.0 39.0 32.0 39.0 11 36.239034267532695 38.0 35.0 39.0 31.0 39.0 12 35.63473459732189 37.0 35.0 39.0 30.0 39.0 13 35.348406145126596 37.0 35.0 39.0 30.0 39.0 14 36.2876620811427 38.0 35.0 40.0 30.0 41.0 15 36.54197207961555 38.0 35.0 40.0 30.0 41.0 16 36.688398227493536 38.0 35.0 40.0 31.0 41.0 17 36.62624438729426 38.0 35.0 40.0 31.0 41.0 18 36.550662123633714 38.0 35.0 40.0 31.0 41.0 19 36.48518935637889 38.0 35.0 40.0 30.0 41.0 20 36.356655712959295 38.0 35.0 40.0 30.0 41.0 21 36.219087890354665 38.0 34.0 40.0 30.0 41.0 22 36.11540938832709 38.0 34.0 40.0 30.0 41.0 23 36.05725306934492 38.0 34.0 40.0 30.0 41.0 24 35.93785962230114 38.0 34.0 40.0 30.0 41.0 25 35.74954532508362 38.0 34.0 40.0 29.0 41.0 26 35.509620849710956 37.0 34.0 40.0 28.0 41.0 27 35.608312757444025 38.0 34.0 40.0 29.0 41.0 28 35.63701817395486 38.0 34.0 40.0 29.0 41.0 29 35.61726784443913 38.0 34.0 40.0 29.0 41.0 30 35.54028127370399 38.0 34.0 40.0 29.0 41.0 31 35.4520084998862 38.0 34.0 40.0 28.0 41.0 32 35.330324324256104 37.0 34.0 40.0 27.0 41.0 33 35.20490135983875 37.0 34.0 40.0 27.0 41.0 34 35.068095851320145 37.0 34.0 40.0 26.0 41.0 35 34.94139983920726 37.0 33.0 40.0 25.0 41.0 36 34.852992019682176 37.0 33.0 40.0 25.0 41.0 37 34.798427243388964 37.0 33.0 40.0 25.0 41.0 38 34.72363421881528 37.0 33.0 40.0 25.0 41.0 39 34.66879430266982 37.0 33.0 40.0 24.0 41.0 40 34.44835469313282 37.0 33.0 40.0 24.0 41.0 41 34.3504608592525 37.0 33.0 40.0 23.0 41.0 42 34.308755715778005 37.0 33.0 40.0 23.0 41.0 43 34.26620411758989 36.0 33.0 40.0 23.0 41.0 44 34.116900780951234 36.0 33.0 40.0 23.0 41.0 45 33.99027628837181 36.0 33.0 40.0 23.0 41.0 46 33.95380216771499 36.0 33.0 40.0 23.0 41.0 47 33.8896722848766 36.0 33.0 40.0 23.0 41.0 48 33.784232298810295 35.0 32.0 40.0 23.0 41.0 49 33.643080506173185 35.0 32.0 40.0 23.0 41.0 50 33.520269266836436 35.0 32.0 39.0 23.0 41.0 51 33.18652462606853 35.0 31.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 6.0 13 8.0 14 47.0 15 129.0 16 325.0 17 776.0 18 1768.0 19 3076.0 20 5205.0 21 8041.0 22 11640.0 23 16489.0 24 23343.0 25 30916.0 26 39290.0 27 47004.0 28 54738.0 29 65432.0 30 77821.0 31 93388.0 32 114656.0 33 144842.0 34 212302.0 35 240985.0 36 205251.0 37 251784.0 38 336165.0 39 391494.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.61084581103782 25.517580553081586 29.595498139861075 12.276075496019518 2 29.278666606646354 27.275867247966218 29.935636626920036 13.509829518467395 3 29.097301483862037 26.57198882780747 30.476029807658733 13.85467988067176 4 25.93836783169182 29.476060518987808 30.159029993188817 14.426541656131558 5 23.390084784303397 33.471141657898514 28.834446163250487 14.304327394547602 6 22.0453492740557 42.52652428109196 25.104660423151632 10.32346602170071 7 91.6434894296233 3.1272126355663272 4.141191338732077 1.0881065960782894 8 92.16646550044952 2.7242210996927607 3.7544810142984373 1.3548323855592805 9 87.48513340286154 5.543773530452387 5.049825976146974 1.9212670905391016 10 42.27485966395075 35.673690866492805 11.062515224194806 10.988934245361643 11 37.45284443702137 24.370954150509913 22.04391888338656 16.132282529082158 12 35.09017561411088 22.085189861222656 24.95442733257803 17.870207192088426 13 26.286373467431055 28.385808336905804 26.54834531145284 18.779472884210296 14 20.60524036242734 31.25992596466178 28.471673847368063 19.663159825542824 15 19.677674083803222 25.75010317744459 36.04950497965269 18.522717759099493 16 24.610502517277226 23.604138540908963 33.37395923302452 18.41139970878929 17 24.471754622370554 23.734177880859395 26.314602647989695 25.47946484878036 18 25.378790587861115 25.237602614754145 29.226457347222706 20.157149450162034 19 28.448156541954834 26.1011799460911 25.444883050838186 20.005780461115883 20 30.423946759176484 26.46925312151211 24.799903069997008 18.3068970493144 21 27.63169796207193 25.832560992489185 27.622190071153526 18.91355097428536 22 26.814818679051044 22.993067232989183 27.176455096460916 23.015658991498853 23 24.04158566378331 26.81549180407182 26.719361137042785 22.42356139510209 24 23.451717794017853 25.139200150780006 31.11061842099174 20.2984636342104 25 23.14393137826976 26.153936119594125 28.913496282877425 21.788636219258695 26 22.096254353751597 30.050025810137516 25.965124551267515 21.88859528484337 27 21.36082319824415 29.876359554778283 27.860518398820684 20.902298848156878 28 20.082348432228724 28.75619537958572 30.81431720091057 20.34713898727499 29 21.553715587009194 26.4961360520292 30.474978049813778 21.475170311147835 30 22.58132507184558 27.125676227706414 29.30710613877398 20.985892561674028 31 26.761347310213452 26.882341532697257 25.781740053420883 20.574571103668404 32 27.694214448376147 26.067229202855902 26.434376831373346 19.8041795173946 33 26.72318953559843 26.819614694824047 25.53571285832864 20.921482911248887 34 22.409888543117653 27.526816669772856 28.491110332342856 21.572184454766628 35 22.830507540472695 26.856468289711326 28.64327865735118 21.669745512464804 36 26.52886675616425 26.687934612635484 26.15612377591163 20.627074855288637 37 23.40409419879822 29.49966196502863 26.675481799751193 20.42076203642195 38 23.543431078098067 29.228729144167815 25.100537532399404 22.127302245334718 39 22.95196453640828 28.008521762762978 26.41207956506027 22.627434135768475 40 25.02274952218641 25.88868279109607 26.35267628197712 22.7358914047404 41 21.351062885442957 25.097634680747323 27.976337972707306 25.574964461102418 42 23.190755637527225 25.820781304625672 26.324489171732285 24.663973886114817 43 22.88801765943492 25.65632844798826 27.56026256924248 23.89539132333434 44 21.84139239276172 27.41995807272527 27.790387185718977 22.94826234879403 45 21.831590009646725 29.343665241464667 25.52094617818545 23.30379857070316 46 22.81288007899122 28.230526808676416 26.384018665756827 22.572574446575537 47 22.197012755298438 27.603342570571897 27.46021936303021 22.739425311099453 48 23.33047114965126 25.939167167653988 29.254981019977933 21.475380662716827 49 23.064460555504837 25.21660952816881 28.896331594847734 22.822598321478623 50 21.706557037038284 28.844416827620677 27.452015651839545 21.997010483501494 51 21.308235305996323 29.489775441286035 26.207449558745516 22.994539693972126 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1743.0 1 2237.0 2 2731.0 3 7909.5 4 13088.0 5 10164.0 6 7240.0 7 6986.0 8 6732.0 9 7184.5 10 7637.0 11 7768.5 12 7900.0 13 7823.5 14 7747.0 15 7889.5 16 8032.0 17 8013.5 18 7995.0 19 8444.5 20 8894.0 21 9282.5 22 9671.0 23 10146.5 24 10622.0 25 13435.5 26 20620.0 27 24991.0 28 28595.0 29 32199.0 30 35776.5 31 39354.0 32 46801.5 33 54249.0 34 61147.0 35 68045.0 36 73366.5 37 78688.0 38 87985.0 39 97282.0 40 116064.5 41 134847.0 42 145382.5 43 155918.0 44 161782.0 45 167646.0 46 171061.5 47 174477.0 48 170713.0 49 166949.0 50 165012.0 51 163075.0 52 155965.5 53 148856.0 54 142102.0 55 135348.0 56 131872.0 57 128396.0 58 123778.0 59 119160.0 60 112443.0 61 105726.0 62 93922.0 63 82118.0 64 71304.0 65 60490.0 66 51604.0 67 42718.0 68 36090.0 69 29462.0 70 24287.5 71 19113.0 72 16048.0 73 12983.0 74 10711.5 75 6420.0 76 4400.0 77 3619.0 78 2838.0 79 2118.0 80 1398.0 81 1140.5 82 883.0 83 607.0 84 331.0 85 234.0 86 137.0 87 123.0 88 109.0 89 74.5 90 40.0 91 28.0 92 16.0 93 11.5 94 7.0 95 4.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2376973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.833671735427966 #Duplication Level Percentage of deduplicated Percentage of total 1 78.13751640505826 14.716163341944846 2 6.276387372828742 2.364148389284833 3 2.130960124472144 1.2040141039678522 4 1.1949824396156137 0.9002362798928536 5 0.7986349225201262 0.7520613983596502 6 0.6141244584483343 0.6939731073068041 7 0.4892379994620609 0.6449903517656157 8 0.41221792348454567 0.6210861643494157 9 0.35232119398216344 0.5971951541604694 >10 6.536976965547474 32.482880024259416 >50 2.6554493868050435 34.76110545954811 >100 0.39867478917419596 9.52684678151416 >500 0.0016011027462797189 0.22314436218212083 >1k 6.861868912627368E-4 0.21879347790019146 >5k 2.2872896375424555E-4 0.29336160356375346 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6810 0.28649883696617506 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2496 0.10500750324046591 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.207031379826359E-5 0.0 0.0 0.009213398721819727 0.0 2 4.207031379826359E-5 0.0 0.0 0.034497657314576144 0.0 3 4.207031379826359E-5 0.0 0.0 0.05826738461059507 0.0 4 4.207031379826359E-5 0.0 0.0 0.11014008152385407 0.0 5 4.207031379826359E-5 0.0 0.0 0.19651043575168922 0.0 6 4.207031379826359E-5 0.0 0.0 0.34678559663908676 0.0 7 4.207031379826359E-5 0.0 0.0 0.41392981746111546 0.0 8 4.207031379826359E-5 0.0 0.0 0.5712727910666213 0.0 9 4.207031379826359E-5 0.0 0.0 0.6411095119717388 0.0 10 4.207031379826359E-5 0.0 0.0 0.758443617155096 0.0 11 8.414062759652717E-5 0.0 0.0 0.9200356924542265 0.0 12 8.414062759652717E-5 0.0 0.0 1.0466252666732017 0.0 13 8.414062759652717E-5 0.0 0.0 1.115157807850573 0.0 14 8.414062759652717E-5 0.0 0.0 1.156807418510854 0.0 15 8.414062759652717E-5 0.0 0.0 1.2022433574129785 0.0 16 8.414062759652717E-5 0.0 0.0 1.2855005084197422 0.0 17 8.414062759652717E-5 0.0 0.0 1.3778869175207291 0.0 18 8.414062759652717E-5 0.0 0.0 1.4850400067649066 0.0 19 8.414062759652717E-5 0.0 0.0 1.556307118339165 0.0 20 8.414062759652717E-5 0.0 0.0 1.634515831690137 0.0 21 8.414062759652717E-5 0.0 0.0 1.731866537819319 0.0 22 8.414062759652717E-5 0.0 0.0 1.8327932206213533 0.0 23 8.414062759652717E-5 0.0 0.0 1.9486548648217712 0.0 24 8.414062759652717E-5 0.0 0.0 2.0444068990266193 0.0 25 8.414062759652717E-5 0.0 0.0 2.1261915890504435 0.0 26 8.414062759652717E-5 0.0 0.0 2.2139502636336212 0.0 27 8.414062759652717E-5 0.0 0.0 2.310669915055829 0.0 28 8.414062759652717E-5 0.0 0.0 2.403603238236194 0.0 29 8.414062759652717E-5 0.0 0.0 2.510419764969985 0.0 30 8.414062759652717E-5 0.0 0.0 2.6540057459634587 0.0 31 8.414062759652717E-5 0.0 0.0 2.7789966482581 0.0 32 8.414062759652717E-5 0.0 0.0 2.8918292298650425 0.0 33 8.414062759652717E-5 0.0 0.0 3.0051666552375647 0.0 34 8.414062759652717E-5 0.0 0.0 3.1352059951879974 0.0 35 8.414062759652717E-5 0.0 0.0 3.283587991954473 0.0 36 8.414062759652717E-5 0.0 0.0 3.4070222926385787 0.0 37 8.414062759652717E-5 0.0 0.0 3.5457281172314534 0.0 38 1.2621094139479076E-4 0.0 0.0 3.7219606617323797 0.0 39 1.2621094139479076E-4 0.0 0.0 4.038792194947103 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGA 885 0.0 39.66102 4 AGGGCGA 2085 0.0 39.38849 6 GCGATAC 140 0.0 38.57143 9 CGTTTTT 4210 0.0 38.1057 1 GGGCGAT 3995 0.0 38.07259 7 GGCGATA 1005 0.0 38.0597 8 AGTACGG 315 0.0 37.857143 2 CGTTAGG 340 0.0 37.72059 2 TAAGGGA 3030 0.0 37.648514 4 GTTGATC 820 0.0 37.591465 16 GTACGGG 930 0.0 37.5 3 TCACGAC 280 0.0 36.964287 25 GCGATAT 280 0.0 36.964287 9 CGGGATA 570 0.0 36.710526 6 ATAGGGC 1090 0.0 36.536697 4 ATAGGGA 3955 0.0 36.409607 4 AACGGGA 940 0.0 36.38298 4 ACGGGAT 1110 0.0 36.283783 5 GTAGGGT 910 0.0 36.0989 4 TACGCAA 25 0.0021075602 36.0 13 >>END_MODULE