SRR1548000_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1548000_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1560871
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3749	0.24018640874229838	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2241	0.14357368418017888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTACG	40	6.8175723E-9	45.000004	1
GCGTAAG	125	0.0	41.4	1
AATGCGG	215	0.0	40.813953	2
GCGAGAC	185	0.0	40.135136	21
TACGGGA	780	0.0	40.096153	4
CGACCCG	175	0.0	39.857143	32
GCTTGCG	120	0.0	39.374996	1
AGGGCGA	1410	0.0	38.776596	6
ACGGGTA	105	0.0	38.57143	5
CGAGGGA	1280	0.0	38.320316	4
GCACCGA	705	0.0	38.297874	9
CGAACGG	100	0.0	38.25	2
CGACGGT	130	0.0	38.076927	28
CGTTTTT	2670	0.0	37.92135	1
TTCGTAG	95	0.0	37.894737	1
TAGGGAT	3110	0.0	37.83762	5
ATAGGGA	2635	0.0	37.656548	4
CGCATCG	90	0.0	37.500004	21
TAGCGGG	990	0.0	37.5	3
CACGACC	205	0.0	37.317074	27