##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547999_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1720273 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.843770727088085 31.0 31.0 31.0 30.0 33.0 2 31.19071333445331 31.0 31.0 33.0 30.0 34.0 3 31.37404295713529 31.0 31.0 34.0 30.0 34.0 4 35.25377774341631 37.0 35.0 37.0 33.0 37.0 5 35.06897219220438 35.0 35.0 37.0 32.0 37.0 6 35.10084038986835 37.0 35.0 37.0 32.0 37.0 7 35.49197249506329 35.0 35.0 37.0 35.0 37.0 8 35.58103917227091 37.0 35.0 37.0 35.0 37.0 9 37.405020017171694 39.0 37.0 39.0 35.0 39.0 10 36.53522028189712 38.0 35.0 39.0 32.0 39.0 11 36.10559137997283 38.0 35.0 39.0 31.0 39.0 12 35.57564293574334 37.0 35.0 39.0 30.0 39.0 13 35.27187022059871 37.0 35.0 39.0 30.0 39.0 14 36.27273113046592 38.0 35.0 40.0 30.0 41.0 15 36.54336666331449 38.0 35.0 40.0 30.0 41.0 16 36.65835131981959 38.0 35.0 40.0 31.0 41.0 17 36.613060252645944 38.0 35.0 40.0 31.0 41.0 18 36.51775328683296 38.0 35.0 40.0 31.0 41.0 19 36.47697720071175 38.0 35.0 40.0 30.0 41.0 20 36.34590265614818 38.0 35.0 40.0 30.0 41.0 21 36.20662999419278 38.0 34.0 40.0 30.0 41.0 22 36.08597705131685 38.0 34.0 40.0 30.0 41.0 23 36.03011498756302 38.0 34.0 40.0 30.0 41.0 24 35.91024099081948 38.0 34.0 40.0 29.0 41.0 25 35.730005644452945 38.0 34.0 40.0 29.0 41.0 26 35.503050969235694 37.0 34.0 40.0 29.0 41.0 27 35.557545226833184 37.0 34.0 40.0 29.0 41.0 28 35.594310321675685 37.0 34.0 40.0 29.0 41.0 29 35.60542658054855 37.0 34.0 40.0 29.0 41.0 30 35.54253481860147 37.0 34.0 40.0 29.0 41.0 31 35.436098805247774 37.0 34.0 40.0 28.0 41.0 32 35.29886419190442 37.0 34.0 40.0 27.0 41.0 33 35.1852607115266 37.0 34.0 40.0 27.0 41.0 34 35.056097491502804 37.0 34.0 40.0 26.0 41.0 35 34.91979877612449 37.0 33.0 40.0 25.0 41.0 36 34.840210245699375 37.0 33.0 40.0 25.0 41.0 37 34.78263973218204 37.0 33.0 40.0 25.0 41.0 38 34.70434401981546 37.0 33.0 40.0 25.0 41.0 39 34.678867830861726 37.0 33.0 40.0 24.0 41.0 40 34.49454941163408 37.0 33.0 40.0 24.0 41.0 41 34.451750972084085 37.0 33.0 40.0 24.0 41.0 42 34.39587844487474 37.0 33.0 40.0 24.0 41.0 43 34.34318971465576 37.0 33.0 40.0 24.0 41.0 44 34.195480019741055 36.0 33.0 40.0 23.0 41.0 45 34.08031399667378 36.0 33.0 40.0 23.0 41.0 46 34.017872744616696 36.0 33.0 40.0 23.0 41.0 47 33.98125413815133 36.0 33.0 40.0 23.0 41.0 48 33.90712462498685 36.0 33.0 40.0 23.0 41.0 49 33.78134691412352 36.0 32.0 40.0 23.0 41.0 50 33.67022908573232 35.0 32.0 40.0 23.0 41.0 51 33.33048766097009 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 4.0 14 27.0 15 64.0 16 226.0 17 556.0 18 1116.0 19 2133.0 20 3798.0 21 5707.0 22 8283.0 23 11963.0 24 16773.0 25 22540.0 26 29146.0 27 34484.0 28 40326.0 29 47614.0 30 56861.0 31 67732.0 32 82857.0 33 103837.0 34 153061.0 35 178617.0 36 144520.0 37 176052.0 38 240161.0 39 291786.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.38042624629928 26.18991288010682 28.916863776854022 13.51279709673988 2 28.071242180746893 27.819944857589462 30.10684931984633 14.001963641817316 3 28.240750160003675 26.855911823297813 31.500988505894124 13.40234951080439 4 24.878900035052574 29.520488899145658 30.572705611260538 15.027905454541227 5 23.25096074867187 33.541943633365165 29.53728855826953 13.669807059693431 6 21.591224183603416 43.44014002428685 24.94854014450032 10.02009564760942 7 91.64545394829774 3.1691481526478644 4.30600259377436 0.8793953052800341 8 92.22408303798292 2.5246574235600976 3.952279667238863 1.2989798712181149 9 87.33706801187951 5.741239907851836 5.10453864008794 1.8171534401807157 10 41.9853709265913 37.6187384211692 10.670050625685574 9.725840026553925 11 33.136891644523864 24.839022643499025 25.846944060622935 16.177141651354173 12 32.44043241973803 23.975380651791898 26.28408397969392 17.300102948776154 13 23.671591660160914 31.809079140345748 27.063437024239757 17.455892175253577 14 18.11898460302522 35.126459579380715 28.258189252519806 18.496366565074265 15 17.42508311180842 27.339381598153317 38.00204967467373 17.23348561536454 16 20.80384915650016 25.37858816594808 36.20721827291366 17.610344404638102 17 21.38776810424857 24.629404751455148 27.656656821330106 26.32617032296618 18 22.184037068535055 27.25369752359073 31.068382750877333 19.493882656996885 19 26.2256048894565 27.58678419064881 26.463706632610055 19.723904287284636 20 28.085251585068182 27.281658201924923 26.593744132471997 18.039346080534894 21 24.610221749687405 28.10571345362044 28.785954322366276 18.498110474325877 22 24.297364429948036 24.695498912091278 28.04450223888883 22.962634419071858 23 21.03590534758146 29.290699790091455 27.400302161343 22.273092700984087 24 20.82146263994145 27.690139878961073 33.2547799099329 18.233617571164576 25 20.509012232360792 28.40136420207723 31.04472371536378 20.044899850198195 26 19.979038210795615 32.90169641678966 26.619786510629417 20.49947886178531 27 19.002914072359445 32.20529532231222 29.539381249371466 19.252409355956875 28 17.861583597487144 29.966522755399872 33.671457960451626 18.500435686661362 29 18.824105243760727 27.54708119002042 32.9862178851845 20.642595681034347 30 20.64695545416338 29.397368905981786 30.330651007136655 19.62502463271818 31 24.853206438745477 28.53762164493659 26.80126933341394 19.807902582903992 32 25.763759589320994 28.62359637104111 27.166908973168795 18.4457350664691 33 24.263358199541585 29.050912267994672 26.47178674547586 20.21394278698788 34 20.279339383923364 29.31424256498823 28.498964989859164 21.907453061229234 35 19.919687165932384 29.17571804010177 29.58495541114695 21.319639382818888 36 25.095319173177742 27.905454541226888 27.082736286624275 19.916489998971095 37 20.705318283784027 31.381240070616702 28.081880027181732 19.831561618417542 38 20.743858678244674 31.586730710765092 26.09888081717262 21.57052979381761 39 20.391763400344015 30.188464272821815 28.42502323759078 20.994749089243395 40 22.80568258642669 27.782508938988173 27.25828981795331 22.153518656631828 41 18.69319578927298 27.294156218228157 28.75526151953789 25.25738647296098 42 21.579191209767288 27.9905573127056 26.983682241132655 23.446569236394456 43 21.406718584782762 27.84470836896237 28.00875209923076 22.739820947024107 44 20.172147095257557 30.26368489187472 28.301321941343033 21.262846071524695 45 19.722741681116894 32.133620652070924 26.02203254948488 22.12160511732731 46 21.609884012595675 30.834233868694096 26.97298626438943 20.582895854320796 47 20.83785538690661 28.884659586007572 27.903245589508174 22.37423943757764 48 21.459210253256312 27.8742966959314 29.56338906673534 21.103103984076945 49 21.259009471171144 26.858004514399745 29.882466329472123 22.00051968495698 50 20.056118999716904 30.55038357283989 28.270629138514643 21.122868288928558 51 19.597412736234308 31.18278319778314 26.98571680192621 22.234087264056345 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1690.0 1 1904.5 2 2119.0 3 6826.5 4 11534.0 5 9008.0 6 6482.0 7 6337.0 8 6192.0 9 6711.5 10 7231.0 11 7982.5 12 8734.0 13 8897.5 14 9061.0 15 9213.0 16 9365.0 17 9109.5 18 8854.0 19 8638.5 20 8423.0 21 9458.5 22 10494.0 23 11011.0 24 11528.0 25 13054.5 26 18350.5 27 22120.0 28 25789.0 29 29458.0 30 33843.0 31 38228.0 32 43599.0 33 48970.0 34 54603.5 35 60237.0 36 64150.5 37 68064.0 38 74764.5 39 81465.0 40 95874.5 41 110284.0 42 121746.5 43 133209.0 44 137637.5 45 142066.0 46 142071.0 47 142076.0 48 137226.0 49 132376.0 50 124545.0 51 116714.0 52 109062.5 53 101411.0 54 93508.0 55 85605.0 56 79147.5 57 72690.0 58 66632.0 59 60574.0 60 54434.5 61 48295.0 62 42694.5 63 37094.0 64 30892.5 65 24691.0 66 21054.5 67 17418.0 68 14544.0 69 11670.0 70 9820.5 71 7971.0 72 6420.0 73 4869.0 74 3813.5 75 2146.0 76 1534.0 77 1311.0 78 1088.0 79 817.0 80 546.0 81 396.5 82 247.0 83 212.0 84 177.0 85 105.5 86 34.0 87 29.0 88 24.0 89 18.0 90 12.0 91 10.5 92 9.0 93 5.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1720273.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.535151840441262 #Duplication Level Percentage of deduplicated Percentage of total 1 77.86564790105764 16.76848550703613 2 6.470630574027057 2.786920238301486 3 2.4061124497873587 1.5544799085404062 4 1.3780504785911212 1.187061052010102 5 0.9298112540036649 1.0011813268960013 6 0.6976070449327003 0.9013844182552337 7 0.5338004839022704 0.8046832131335492 8 0.4617266889894631 0.795468348493783 9 0.4081176316580661 0.7909987649865958 >10 6.580129973561253 35.84849441058555 >50 2.005438476982518 29.480535443543815 >100 0.25989856348919343 7.168845615321638 >500 0.002202530194713834 0.33445363612076984 >1k 5.506325486784585E-4 0.18646635093065433 >5k 2.7531627433922924E-4 0.3905417658442671 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6587 0.3829043413458213 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1825 0.10608781280645571 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.015172010489032845 0.0 2 0.0 0.0 0.0 0.058886002396131315 0.0 3 0.0 0.0 0.0 0.0895788052245196 0.0 4 0.0 0.0 0.0 0.15038310779742517 0.0 5 0.0 0.0 0.0 0.2678644610477523 0.0 6 0.0 0.0 0.0 0.46806524313292136 0.0 7 0.0 0.0 0.0 0.5654335096813122 0.0 8 0.0 0.0 0.0 0.796617746136805 0.0 9 0.0 0.0 0.0 0.8853245967355181 0.0 10 0.0 0.0 0.0 1.0270462885832656 0.0 11 0.0 0.0 0.0 1.2434654267084353 0.0 12 0.0 0.0 0.0 1.4097762390039255 0.0 13 0.0 0.0 0.0 1.4958090954168322 0.0 14 0.0 0.0 0.0 1.543301557369092 0.0 15 0.0 0.0 0.0 1.5963745289265134 0.0 16 0.0 0.0 0.0 1.6949635319510334 0.0 17 0.0 0.0 0.0 1.8147700975368444 0.0 18 0.0 0.0 0.0 1.954166577049108 0.0 19 0.0 0.0 0.0 2.0421177336387886 0.0 20 0.0 0.0 0.0 2.134835575516212 0.0 21 0.0 0.0 0.0 2.2570254837458936 0.0 22 0.0 0.0 0.0 2.4028162971807383 0.0 23 0.0 0.0 0.0 2.5633722089459057 0.0 24 0.0 0.0 0.0 2.686201550567846 0.0 25 0.0 0.0 0.0 2.788743414562689 0.0 26 0.0 0.0 0.0 2.899539782348499 0.0 27 0.0 0.0 0.0 3.010859322909794 0.0 28 0.0 0.0 0.0 3.1197955208272177 0.0 29 0.0 0.0 0.0 3.2525070148749644 0.0 30 0.0 0.0 0.0 3.413004796331745 0.0 31 0.0 0.0 0.0 3.5554240518801374 0.0 32 0.0 0.0 0.0 3.68261316663111 0.0 33 0.0 0.0 0.0 3.817359221472406 0.0 34 0.0 0.0 0.0 3.954895531116282 0.0 35 0.0 0.0 0.0 4.116497788432417 0.0 36 0.0 0.0 0.0 4.260544692615649 0.0 37 0.0 0.0 0.0 4.421333125614365 0.0 38 0.0 0.0 0.0 4.589445977469855 0.0 39 0.0 0.0 0.0 4.825222508287928 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATCG 65 0.0 44.999996 9 CGACGGT 155 0.0 43.548386 28 CGGTCTA 160 0.0 42.1875 31 CGACAAT 220 0.0 39.886364 20 TACGGGA 940 0.0 39.734043 4 CAACCGG 40 3.459554E-7 39.375 2 ACGGGTA 160 0.0 39.375 5 ACGTAAG 40 3.459554E-7 39.375 1 CGTTTTT 3780 0.0 39.107143 1 TAACGGG 530 0.0 39.056602 3 CGTAAGG 265 0.0 39.056602 2 TTACGGG 660 0.0 38.863636 3 TAGGGCG 575 0.0 38.739132 5 GCGATGC 345 0.0 38.47826 9 ACGGGAT 950 0.0 38.368423 5 AGGGATT 3565 0.0 38.246845 6 ATAGCGG 295 0.0 38.135593 2 GACCGTA 30 1.1401575E-4 37.500004 9 CGTAACG 30 1.1401575E-4 37.500004 22 GCGGATA 30 1.1401575E-4 37.500004 17 >>END_MODULE