SRR1547997_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547997_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2264307
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5131	0.22660354801711957	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3384	0.14944969917948406	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2490	0.10996742049554234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGCA	20	7.034738E-4	45.0	39
ACCGTAC	20	7.034738E-4	45.0	14
TACGTCC	20	7.034738E-4	45.0	28
CGAACTA	45	1.9297659E-8	40.000004	32
CGGTCTA	280	0.0	39.375	31
TATGGGC	700	0.0	38.571426	4
CGGTAGT	480	0.0	38.437504	12
ACGGGAT	805	0.0	38.291924	5
CGCATCG	165	0.0	38.181816	21
TTAATCG	65	9.094947E-12	38.076927	20
CTCACGA	290	0.0	38.017242	24
TACGGGA	680	0.0	37.72059	4
ATAACGC	185	0.0	37.7027	11
GACGTAG	90	0.0	37.500004	1
CAATACG	90	0.0	37.500004	1
GGGCGAT	3435	0.0	37.40175	7
TAGGGAC	1945	0.0	37.133675	5
AGGGCGA	1845	0.0	36.82927	6
CGACGGT	295	0.0	36.61017	28
CGCATGG	260	0.0	36.346157	2