##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547996_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1644138 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.99342147678601 31.0 31.0 33.0 30.0 33.0 2 31.34327775405714 31.0 31.0 33.0 30.0 34.0 3 31.538291797890444 31.0 31.0 34.0 30.0 34.0 4 35.414150150413164 37.0 35.0 37.0 33.0 37.0 5 35.256103806371485 37.0 35.0 37.0 33.0 37.0 6 35.286211376417306 37.0 35.0 37.0 32.0 37.0 7 35.58460177916939 36.0 35.0 37.0 35.0 37.0 8 35.66769821024756 37.0 35.0 37.0 35.0 37.0 9 37.5314967478399 39.0 37.0 39.0 35.0 39.0 10 36.73491154635438 39.0 37.0 39.0 32.0 39.0 11 36.345573790034656 38.0 35.0 39.0 32.0 39.0 12 35.54648271617103 37.0 35.0 39.0 30.0 39.0 13 35.093905742705296 37.0 34.0 39.0 29.0 39.0 14 36.07791925008728 38.0 35.0 40.0 29.0 41.0 15 36.39989648070904 38.0 35.0 40.0 30.0 41.0 16 36.612141438249104 38.0 35.0 40.0 31.0 41.0 17 36.55643017800209 38.0 35.0 40.0 31.0 41.0 18 36.46926292075239 38.0 35.0 40.0 31.0 41.0 19 36.40001386744908 38.0 35.0 40.0 31.0 41.0 20 36.25485512773259 38.0 35.0 40.0 31.0 41.0 21 36.11528411848641 38.0 34.0 40.0 30.0 41.0 22 35.98102531539323 37.0 34.0 40.0 30.0 41.0 23 35.94295369366805 37.0 34.0 40.0 30.0 41.0 24 35.80978603985797 37.0 34.0 40.0 30.0 41.0 25 35.647464507237224 37.0 34.0 40.0 30.0 41.0 26 35.40428419025653 37.0 34.0 40.0 29.0 41.0 27 35.47979184229061 37.0 34.0 40.0 29.0 41.0 28 35.54422438992347 37.0 34.0 40.0 29.0 41.0 29 35.56769322283166 37.0 34.0 40.0 29.0 41.0 30 35.51240346005019 37.0 34.0 40.0 29.0 41.0 31 35.37917072654485 37.0 34.0 40.0 29.0 41.0 32 35.21011070846851 37.0 34.0 40.0 29.0 41.0 33 35.08518263065509 36.0 34.0 40.0 27.0 41.0 34 34.93118947436286 36.0 34.0 40.0 27.0 41.0 35 34.78712431681525 36.0 33.0 40.0 26.0 41.0 36 34.66078394879262 36.0 33.0 40.0 25.0 41.0 37 34.580641649301946 36.0 33.0 40.0 25.0 41.0 38 34.536093077345086 36.0 33.0 40.0 25.0 41.0 39 34.54046010736325 36.0 33.0 40.0 25.0 41.0 40 34.27570800018003 36.0 33.0 40.0 23.0 41.0 41 34.25100995171938 36.0 33.0 40.0 23.0 41.0 42 34.186960583600644 36.0 33.0 40.0 23.0 41.0 43 34.11444781399128 36.0 33.0 40.0 23.0 41.0 44 33.9131976756209 35.0 33.0 40.0 23.0 41.0 45 33.766349296713535 35.0 33.0 40.0 23.0 41.0 46 33.730382121208805 35.0 33.0 40.0 23.0 41.0 47 33.704490134039844 35.0 33.0 40.0 23.0 41.0 48 33.65691444392137 35.0 33.0 40.0 23.0 41.0 49 33.549107191732084 35.0 32.0 39.0 23.0 41.0 50 33.408424353673475 35.0 32.0 39.0 23.0 41.0 51 33.04636411298808 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 13.0 14 24.0 15 52.0 16 163.0 17 486.0 18 1064.0 19 2029.0 20 3312.0 21 5173.0 22 7842.0 23 11358.0 24 16345.0 25 22215.0 26 27539.0 27 32133.0 28 37279.0 29 44149.0 30 52865.0 31 64292.0 32 79587.0 33 103482.0 34 167797.0 35 200306.0 36 128860.0 37 157048.0 38 215225.0 39 263460.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.659606432063484 25.44883701976355 30.311749986923235 11.579806561249725 2 29.621601106476465 28.279073897689855 29.08697445104973 13.012350544783954 3 28.917463132656746 26.89439694234912 30.572007945805034 13.616131979189095 4 25.558073592362685 29.51425002037542 29.873769720059997 15.053906667201902 5 23.045328311857034 33.79673725684827 28.87732051689092 14.280613914403778 6 21.200227718111254 42.92954727644516 25.78773801225931 10.08248699318427 7 90.78927681253035 3.8785673708654627 4.307850070979443 1.024305745624759 8 91.38983467324519 3.2069692446741085 3.918709986631293 1.4844860954494088 9 87.04506556019021 5.661142799448708 5.431052624536383 1.862739015824706 10 46.76462681356431 29.897003779488095 11.748223081030911 11.590146325916681 11 41.4588069857883 23.48799188389296 20.244650996449202 14.808550133869542 12 38.52967329992981 23.247805232894077 22.957744422913407 15.26477704426271 13 23.687062764804416 36.53963353441135 23.286974694338312 16.48632900644593 14 17.906465272379812 39.03036119839089 26.1441557825438 16.919017746685498 15 16.693610876945854 26.326074818537133 40.59239552884247 16.38791877567455 16 19.49234188371049 22.573287643737935 39.73036326634382 18.204007206207752 17 20.1037260862531 22.863287631573506 26.551116755406177 30.48186952676722 18 22.846987296686773 25.535386932240485 31.08017696811338 20.537448802959364 19 28.299935893459065 26.971884355206193 24.553230933169843 20.174948818164896 20 30.52821600133322 25.926290858796524 24.53468017891442 19.010812960955832 21 24.88921246270082 28.420302918611455 27.508153208550624 19.182331410137106 22 25.036949453148093 25.447377288281153 25.33455220912113 24.18112104944962 23 21.547157233760185 30.006605284957832 24.895598787936294 23.550638693345693 24 21.88563247124025 26.060342866596358 34.68212522306522 17.37189943909818 25 20.37037037037037 26.838258102422056 32.06470503084291 20.72666649636466 26 18.998161954775085 33.90226367859632 25.79734791118507 21.30222645544352 27 19.38389599899765 34.00706023460317 27.446479553419483 19.16256421297969 28 16.921754743214986 30.462649728915697 34.15297256069746 18.462622967171853 29 18.461649812850258 27.253004309857204 33.027276299191435 21.258069578101107 30 20.09490687521364 30.578759203911105 30.423601911761665 18.902732009113592 31 27.727052108764592 28.910286119534977 24.655472959082513 18.707188812617918 32 27.880141447980645 28.493897714182143 26.018314764332434 17.607646073504778 33 27.028448950148952 29.056867489225358 24.36097213250956 19.55371142811613 34 20.94380155437074 29.403614538438987 27.372337358542897 22.280246548647376 35 20.766444179259892 27.789455629636926 29.126143912493962 22.317956278609216 36 28.166309640674932 27.15343845832892 25.537211596593473 19.14304030440267 37 21.199558674515156 31.725986504782444 27.835011416316636 19.239443404385764 38 21.451483999518288 32.51399821669471 24.262136146722476 21.772381637064527 39 21.234409763657307 30.563979422651872 26.923591571996997 21.278019241693823 40 23.757677275265216 26.975837794637673 26.598497206438875 22.667987723658236 41 19.14760196528515 25.600527449642307 28.43423118983929 26.817639395233243 42 22.49938873744175 26.695386883582767 25.482410843858606 25.322813535116882 43 22.37093236699109 26.875298788787806 26.51699553200522 24.236773312215885 44 21.12322688241498 29.585107819416617 27.343811772491115 21.947853525677285 45 19.90611493682404 34.03181484765877 24.22643354754893 21.83563666796826 46 22.88360222803682 31.25382419237315 25.87106435104596 19.99150922854408 47 22.049913085154653 28.987773532392048 26.420409965586835 22.541903416866468 48 22.749611042382085 26.98934031084982 29.53736243551332 20.723686211254773 49 22.729296445918774 25.78615663648672 29.803155209599197 21.681391707995314 50 20.61578772584783 31.478926951387294 27.02181933633308 20.883465986431794 51 19.833614939865146 32.13708338351161 25.333822343379936 22.695479333243316 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1920.0 1 2208.5 2 2497.0 3 5769.5 4 9042.0 5 7319.5 6 5597.0 7 5707.5 8 5818.0 9 6348.0 10 6878.0 11 7370.0 12 7862.0 13 7736.0 14 7610.0 15 7507.5 16 7405.0 17 7216.0 18 7027.0 19 7499.0 20 7971.0 21 8117.5 22 8264.0 23 9447.5 24 10631.0 25 10403.5 26 12133.0 27 14090.0 28 17953.0 29 21816.0 30 25142.5 31 28469.0 32 32663.5 33 36858.0 34 42392.0 35 47926.0 36 51606.5 37 55287.0 38 64563.5 39 73840.0 40 89959.0 41 106078.0 42 125017.0 43 143956.0 44 142713.0 45 141470.0 46 139814.5 47 138159.0 48 132371.0 49 126583.0 50 121530.0 51 116477.0 52 106805.5 53 97134.0 54 88038.5 55 78943.0 56 76019.5 57 73096.0 58 67888.5 59 62681.0 60 57222.5 61 51764.0 62 45662.5 63 39561.0 64 34442.5 65 29324.0 66 24472.5 67 19621.0 68 16557.0 69 13493.0 70 12173.5 71 10854.0 72 9225.5 73 7597.0 74 6098.5 75 3514.5 76 2429.0 77 1896.0 78 1363.0 79 1142.0 80 921.0 81 731.5 82 542.0 83 406.0 84 270.0 85 200.0 86 130.0 87 96.5 88 63.0 89 46.0 90 29.0 91 21.5 92 14.0 93 7.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1644138.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.273120322768335 #Duplication Level Percentage of deduplicated Percentage of total 1 80.0686706447981 15.431731234213029 2 6.213692530561437 2.395144875803949 3 2.0823479691956144 1.2040002889253811 4 1.1032225829992797 0.8505016633976157 5 0.6877123171358189 0.6627181117804227 6 0.5121753863520986 0.5922730708514613 7 0.409785946009957 0.5528497690820545 8 0.34805557143279736 0.5366493525787355 9 0.2691899407097508 0.46693171052801113 >10 5.228600195217677 26.468356188200186 >50 2.4180220038803695 32.849042515253124 >100 0.6543448219354547 16.81450554910678 >500 0.0016077268352204595 0.20277181297937777 >1k 0.0025723629363527353 0.9725238572999312 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4628 0.28148488752160705 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3225 0.19615141794666874 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1705 0.1037017573950605 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009001677474761851 0.0 2 0.0 0.0 0.0 0.044765098793410285 0.0 3 0.0 0.0 0.0 0.0717093090725961 0.0 4 0.0 0.0 0.0 0.1491967219296677 0.0 5 0.0 0.0 0.0 0.2591631602700017 0.0 6 0.0 0.0 0.0 0.4666883193503222 0.0 7 0.0 0.0 0.0 0.5459395744152863 0.0 8 0.0 0.0 0.0 0.7432466131188501 0.0 9 0.0 0.0 0.0 0.8201258045249243 0.0 10 0.0 0.0 0.0 0.9564282316934467 0.0 11 0.0 0.0 0.0 1.180983591401695 0.0 12 0.0 0.0 0.0 1.3405200779983188 0.0 13 0.0 0.0 0.0 1.4310234299067353 0.0 14 0.0 0.0 0.0 1.4786471695198335 0.0 15 0.0 0.0 0.0 1.5354550530429927 0.0 16 0.0 0.0 0.0 1.6518078166187997 0.0 17 0.0 0.0 0.0 1.7685863352103048 0.0 18 0.0 0.0 0.0 1.913160574112392 0.0 19 0.0 0.0 0.0 1.9958786914480415 0.0 20 0.0 0.0 0.0 2.076650500140499 0.0 21 0.0 0.0 0.0 2.1969567031477895 0.0 22 0.0 0.0 0.0 2.324683207857248 0.0 23 0.0 0.0 0.0 2.471447043982926 0.0 24 0.0 0.0 0.0 2.5839071902723494 0.0 25 0.0 0.0 0.0 2.6727683442630727 0.0 26 0.0 0.0 0.0 2.7671034913127732 0.0 27 0.0 0.0 0.0 2.858458353252586 0.0 28 0.0 0.0 0.0 2.9516987016904905 0.0 29 0.0 0.0 0.0 3.061969250756323 0.0 30 0.0 0.0 0.0 3.1980283893444468 0.0 31 0.0 0.0 0.0 3.322105565347921 0.0 32 0.0 0.0 0.0 3.4214281282958 0.0 33 0.0 0.0 0.0 3.5300564794439397 0.0 34 0.0 0.0 0.0 3.6476865080668412 0.0 35 0.0 0.0 0.0 3.8024180452005854 0.0 36 0.0 0.0 0.0 3.9347670329376245 0.0 37 0.0 0.0 0.0 4.074171389506233 0.0 38 0.0 0.0 6.0822145099742234E-5 4.216069454023932 0.0 39 0.0 0.0 6.0822145099742234E-5 4.402550150899742 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACCGT 20 7.0341723E-4 45.000004 14 TCGATTG 40 6.8175723E-9 45.000004 1 ACTATCG 25 3.891541E-5 45.0 22 TCGTATC 25 3.891541E-5 45.0 36 TAGTACG 55 1.8189894E-12 45.0 1 ATTACGA 30 2.1660744E-6 44.999996 17 CCCCGTA 30 2.1660744E-6 44.999996 40 GCGTAAG 105 0.0 42.857143 1 TATTACG 65 0.0 41.53846 1 TACGGGA 620 0.0 39.919353 4 TAAGGGA 1830 0.0 39.71311 4 ATATGCG 80 0.0 39.375004 1 CGTTTTT 3090 0.0 39.32039 1 CGTAAGG 270 0.0 39.166668 2 CGAAAGG 265 0.0 39.056602 2 ACGTAAG 75 0.0 39.0 1 TCACGAC 295 0.0 38.898304 25 CGACAGG 145 0.0 38.793102 2 CGCAGTA 310 0.0 38.46774 37 CGGGTAT 100 0.0 38.25 6 >>END_MODULE