##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547994_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3674814 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.929700931802262 31.0 31.0 33.0 30.0 33.0 2 31.293760446106933 31.0 31.0 33.0 30.0 34.0 3 31.506470259447145 31.0 31.0 34.0 30.0 34.0 4 35.36858600190377 37.0 35.0 37.0 33.0 37.0 5 35.194803600944155 37.0 35.0 37.0 32.0 37.0 6 35.22760988719429 37.0 35.0 37.0 32.0 37.0 7 35.54673950844859 35.0 35.0 37.0 35.0 37.0 8 35.61736730076679 37.0 35.0 37.0 35.0 37.0 9 37.43819333441094 39.0 37.0 39.0 35.0 39.0 10 36.602993239929965 39.0 35.0 39.0 32.0 39.0 11 36.2626481231431 38.0 35.0 39.0 31.0 39.0 12 35.80795898785625 37.0 35.0 39.0 31.0 39.0 13 35.63941331452422 37.0 35.0 39.0 30.0 39.0 14 36.64597228594427 38.0 35.0 40.0 31.0 41.0 15 36.80056351151378 38.0 35.0 40.0 31.0 41.0 16 36.89831784683524 38.0 35.0 40.0 31.0 41.0 17 36.800894956860404 38.0 35.0 40.0 31.0 41.0 18 36.737221258001085 38.0 35.0 40.0 31.0 41.0 19 36.7088252629929 38.0 35.0 40.0 31.0 41.0 20 36.62177214955641 38.0 35.0 40.0 30.0 41.0 21 36.50431341559056 38.0 35.0 40.0 30.0 41.0 22 36.385569718630656 38.0 35.0 40.0 30.0 41.0 23 36.27112610325312 38.0 34.0 40.0 30.0 41.0 24 36.172169802335574 38.0 34.0 40.0 30.0 41.0 25 36.004207287770214 38.0 34.0 40.0 30.0 41.0 26 35.74880007532354 38.0 34.0 40.0 29.0 41.0 27 35.864466337616 38.0 34.0 40.0 29.0 41.0 28 35.881909397319156 38.0 34.0 40.0 29.0 41.0 29 35.87204495247923 38.0 34.0 40.0 29.0 41.0 30 35.789147695638476 38.0 34.0 40.0 29.0 41.0 31 35.71412158547344 38.0 34.0 40.0 29.0 41.0 32 35.60212326392574 38.0 34.0 40.0 28.0 41.0 33 35.52092758980454 38.0 34.0 40.0 27.0 41.0 34 35.39298179445272 38.0 34.0 40.0 27.0 41.0 35 35.285292262411105 38.0 34.0 40.0 27.0 41.0 36 35.239432526380924 38.0 34.0 40.0 26.0 41.0 37 35.197558570311315 38.0 34.0 40.0 26.0 41.0 38 35.10632837471502 38.0 34.0 40.0 26.0 41.0 39 35.081995170367804 38.0 34.0 40.0 26.0 41.0 40 34.891562130763624 37.0 33.0 40.0 25.0 41.0 41 34.82792108661826 37.0 33.0 40.0 25.0 41.0 42 34.797031087831925 37.0 33.0 40.0 25.0 41.0 43 34.752096840819696 37.0 33.0 40.0 25.0 41.0 44 34.611290530622774 37.0 33.0 40.0 24.0 41.0 45 34.44954084750956 37.0 33.0 40.0 24.0 41.0 46 34.38365234267639 37.0 33.0 40.0 24.0 41.0 47 34.3245875845689 36.0 33.0 40.0 24.0 41.0 48 34.23037601358872 36.0 33.0 40.0 23.0 41.0 49 34.095576810146035 36.0 33.0 40.0 24.0 41.0 50 33.993253536097335 36.0 33.0 40.0 24.0 41.0 51 33.677370337655184 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 4.0 12 11.0 13 21.0 14 83.0 15 184.0 16 455.0 17 1054.0 18 2130.0 19 4106.0 20 6958.0 21 10808.0 22 15852.0 23 22437.0 24 31367.0 25 42695.0 26 53698.0 27 65474.0 28 77644.0 29 92744.0 30 113095.0 31 137990.0 32 168409.0 33 212930.0 34 308601.0 35 351710.0 36 325202.0 37 404286.0 38 556330.0 39 668464.0 40 68.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.09350405217788 24.92409139619039 28.38372227818877 11.598682273442956 2 31.515554256623602 26.233354939869063 28.1265391935483 14.124551609959035 3 30.612406505472112 26.3907506611219 29.133284024715266 13.863558808690726 4 26.928655436710535 29.706591952681144 27.47785330087455 15.88689930973377 5 23.843002666257394 33.07487127239637 27.428680744113855 15.65344531723238 6 22.47240268487058 42.52786671651953 24.691943592247117 10.307787006362771 7 91.71155329222105 3.1118853906619495 3.873937565275413 1.3026237518415897 8 92.03410022929052 2.689986486390876 3.9211508391989365 1.3547624451196714 9 86.94176086191028 5.58382002463254 5.270334770684992 2.204084342772178 10 39.21186215139052 38.115289644591535 11.417067639341747 11.255780564676199 11 33.37733556038482 26.85235225510733 23.30605031982571 16.464261864682133 12 30.531722149746898 24.301556486940566 26.584093779984514 18.582627583328026 13 25.023007967205956 28.95098908407337 27.430259055288243 18.595743893432427 14 21.106809759623207 31.42676064693342 28.429602151292556 19.036827442150813 15 20.767608918437777 27.422340287154668 33.872489872956834 17.937560921450718 16 24.3050668686905 25.307811497398237 32.869445909371194 17.517675724540073 17 23.119102082445533 25.547850857213454 27.429850871363833 23.903196188977184 18 24.90732864302792 25.880874515009467 29.008134833490896 20.20366200847172 19 26.688888199511595 28.0346433860326 25.84925386699844 19.427214547457368 20 29.45923249448816 27.403291704015498 25.001238157904048 18.136237643592303 21 27.27297218308192 26.994046501401158 27.25019552009979 18.48278579541713 22 26.0764218270639 24.34207554450375 26.943785454175366 22.637717174256984 23 23.587425105052937 29.04933419759476 26.929281318727966 20.433959378624333 24 22.902002659182205 27.325382998976274 30.248469718467387 19.524144623374134 25 23.679837945539557 27.69699364375993 27.79229098397905 20.83087742672146 26 22.25598356814794 31.093274380689746 25.43946441915155 21.211277632010763 27 22.010175208867715 29.45229336777317 27.755255095904175 20.78227632745494 28 20.065940752375493 30.035479346709792 29.98410259675728 19.914477304157437 29 21.484053342563733 28.144880257885163 29.52312688478927 20.847939514761833 30 22.882192132717467 27.12744100789863 29.638098690165 20.352268169218902 31 25.763208695732626 27.464845839816654 26.330856473280008 20.44108899117071 32 25.331159617874537 27.634623140109948 26.808649362933746 20.225567879081773 33 25.414184228099707 27.58150480541328 25.494215489545862 21.510095476941146 34 21.747168700238976 29.119623469378315 28.223714179819716 20.909493650562993 35 21.760339434866633 28.396348767583884 28.667736652793856 21.175575144755626 36 25.041675578682348 29.468103691778687 25.523822430196468 19.966398299342497 37 22.723762345522793 30.059235651110505 26.503300575212783 20.713701428153914 38 22.59202778698459 30.542851964752504 25.919162167119207 20.945958081143697 39 22.972618478105286 28.40785955425227 25.880956151794347 22.738565815848094 40 24.41726302338023 26.560936145339603 27.392842195550575 21.62895863572959 41 20.4751587427282 27.504711803100783 27.853137600977902 24.166991853193114 42 22.92170433660044 27.947700210133085 26.028990855047358 23.101604598219122 43 22.571482529455913 27.427537829125505 26.507600112549913 23.493379528868672 44 22.165067402050827 28.21865269915702 28.124307788094853 21.4919721106973 45 22.010229633390967 29.11570490370397 25.767236110453485 23.10682935245158 46 22.71516327084854 28.83073809994193 26.44819574541732 22.005902883792213 47 22.175816245393644 28.39379081499091 27.97474919819071 21.455643741424733 48 23.012865413052197 27.303613189674365 28.556030318813413 21.127491078460025 49 22.78773837260879 27.270387018227314 28.302330403661248 21.639544205502645 50 21.28883257764883 29.59638229309021 27.675060560888255 21.43972456837271 51 21.550696171289214 28.27590729762105 27.331451333319183 22.841945197770556 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1353.0 1 2665.5 2 3978.0 3 9528.0 4 15078.0 5 12154.0 6 9230.0 7 9273.5 8 9317.0 9 9814.0 10 10311.0 11 10702.5 12 11094.0 13 11669.5 14 12245.0 15 12310.0 16 12375.0 17 12470.5 18 12566.0 19 13090.5 20 13615.0 21 14922.5 22 16230.0 23 19544.5 24 22859.0 25 27080.0 26 36134.0 27 40967.0 28 50631.5 29 60296.0 30 69908.5 31 79521.0 32 91025.5 33 102530.0 34 110326.5 35 118123.0 36 128328.0 37 138533.0 38 155834.5 39 173136.0 40 192810.5 41 212485.0 42 230827.0 43 249169.0 44 251083.0 45 252997.0 46 257850.5 47 262704.0 48 265931.5 49 269159.0 50 265810.0 51 262461.0 52 249285.5 53 236110.0 54 221383.5 55 206657.0 56 191695.5 57 176734.0 58 166924.0 59 157114.0 60 148666.0 61 140218.0 62 123910.0 63 107602.0 64 92854.5 65 78107.0 66 66309.0 67 54511.0 68 45197.5 69 35884.0 70 30506.5 71 25129.0 72 22308.0 73 19487.0 74 17430.0 75 12456.0 76 9539.0 77 6947.0 78 4355.0 79 3256.0 80 2157.0 81 1677.0 82 1197.0 83 871.0 84 545.0 85 390.5 86 236.0 87 167.0 88 98.0 89 76.5 90 55.0 91 45.0 92 35.0 93 27.0 94 19.0 95 17.5 96 16.0 97 9.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3674814.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.77058854003871 #Duplication Level Percentage of deduplicated Percentage of total 1 79.33315033255681 13.304636218123452 2 6.749354487161704 2.2638129403010585 3 2.2112708661493787 1.112529415402987 4 1.176384619859239 0.7891464969795657 5 0.7352272877393466 0.6165097163042614 6 0.5638421875310612 0.5673579197159263 7 0.43140449170710904 0.5064435057321126 8 0.34461444693992577 0.46235096756659966 9 0.2885767084517822 0.4355641115715195 >10 4.637512093109579 19.816915345728432 >50 2.137218875438687 25.86808770352048 >100 1.3837738825165564 32.92506174537468 >500 0.005835657160042102 0.606022934444147 >1k 0.0016673306171548863 0.5418219167039282 >5k 1.6673306171548864E-4 0.18373906253091357 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6571 0.17881177115358762 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.721226162739121E-5 0.0 0.0 0.009823626447488227 0.0 2 2.721226162739121E-5 0.0 0.0 0.040355783993421164 0.0 3 2.721226162739121E-5 0.0 0.0 0.06335014506856673 0.0 4 2.721226162739121E-5 0.0 0.0 0.10844086258515397 0.0 5 2.721226162739121E-5 0.0 0.0 0.19571058562419757 0.0 6 2.721226162739121E-5 0.0 0.0 0.3562901414874331 0.0 7 2.721226162739121E-5 0.0 0.0 0.4257358331605355 0.0 8 2.721226162739121E-5 0.0 0.0 0.5943974307271062 0.0 9 2.721226162739121E-5 0.0 0.0 0.6781295597545889 0.0 10 2.721226162739121E-5 0.0 0.0 0.8247220131413454 0.0 11 2.721226162739121E-5 0.0 0.0 1.0155071794109851 0.0 12 2.721226162739121E-5 0.0 0.0 1.1633241845709743 0.0 13 2.721226162739121E-5 0.0 0.0 1.2440085402961891 0.0 14 2.721226162739121E-5 0.0 0.0 1.2860242722488813 0.0 15 2.721226162739121E-5 0.0 0.0 1.3368295647072206 0.0 16 2.721226162739121E-5 0.0 0.0 1.4281811269903728 0.0 17 2.721226162739121E-5 0.0 0.0 1.535043678401138 0.0 18 2.721226162739121E-5 0.0 0.0 1.6587506197592585 0.0 19 2.721226162739121E-5 0.0 0.0 1.7349993768392087 0.0 20 2.721226162739121E-5 0.0 0.0 1.8076016908610886 0.0 21 2.721226162739121E-5 0.0 0.0 1.9033888517895055 0.0 22 2.721226162739121E-5 0.0 0.0 2.013925058519969 0.0 23 2.721226162739121E-5 0.0 0.0 2.136244174535092 0.0 24 2.721226162739121E-5 0.0 0.0 2.2287114395449676 0.0 25 2.721226162739121E-5 0.0 0.0 2.312171445956176 0.0 26 2.721226162739121E-5 0.0 0.0 2.4002303245824144 0.0 27 2.721226162739121E-5 0.0 0.0 2.490575033185353 0.0 28 2.721226162739121E-5 0.0 0.0 2.5881037788579233 0.0 29 2.721226162739121E-5 0.0 0.0 2.687700656414175 0.0 30 2.721226162739121E-5 0.0 0.0 2.811434810033923 0.0 31 2.721226162739121E-5 0.0 0.0 2.9255630352992017 0.0 32 2.721226162739121E-5 0.0 0.0 3.040997449122595 0.0 33 2.721226162739121E-5 0.0 0.0 3.1605409144517247 0.0 34 2.721226162739121E-5 0.0 0.0 3.272437734263557 0.0 35 2.721226162739121E-5 0.0 0.0 3.4050430851738347 0.0 36 2.721226162739121E-5 0.0 0.0 3.5254573428750406 0.0 37 2.721226162739121E-5 0.0 0.0 3.6604573728085286 0.0 38 2.721226162739121E-5 0.0 0.0 3.8061790338232084 0.0 39 2.721226162739121E-5 0.0 0.0 4.006815038801964 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 365 0.0 41.30137 28 CGGTCTA 365 0.0 41.30137 31 CCGTCGA 55 6.184564E-11 40.909092 19 GACCGAT 2030 0.0 39.790638 9 AACACGT 2885 0.0 39.774696 41 GACACGA 3000 0.0 39.675 25 CACGACC 3025 0.0 39.49587 27 TAACGGG 805 0.0 39.40994 3 GGGCGAT 6805 0.0 39.147686 7 GGCGATT 1850 0.0 39.04054 8 GCGAGAC 3045 0.0 39.01478 21 AGGGCGA 3530 0.0 38.88102 6 ACGACCA 3060 0.0 38.82353 28 GCGATAC 250 0.0 38.699997 9 ACACGAC 3070 0.0 38.697067 26 GGACCGA 2220 0.0 38.51351 8 CACGTGA 2990 0.0 38.377926 43 CGAGACA 3105 0.0 38.260868 22 AAACACG 3070 0.0 38.257328 40 TCAAGCG 3115 0.0 37.993576 17 >>END_MODULE