##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547988_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2347037 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.856532726156427 31.0 31.0 31.0 30.0 33.0 2 31.192249206126704 31.0 31.0 33.0 30.0 34.0 3 31.30198970020498 31.0 31.0 34.0 30.0 34.0 4 35.20882201686637 37.0 35.0 37.0 33.0 37.0 5 35.061607039002794 35.0 35.0 37.0 32.0 37.0 6 35.111158452124954 37.0 35.0 37.0 32.0 37.0 7 35.54992784519375 35.0 35.0 37.0 35.0 37.0 8 35.64339377691958 37.0 35.0 37.0 35.0 37.0 9 37.462117981097016 39.0 37.0 39.0 35.0 39.0 10 36.573565734157576 39.0 35.0 39.0 32.0 39.0 11 36.137296514711956 38.0 35.0 39.0 31.0 39.0 12 35.90545781766542 37.0 35.0 39.0 31.0 39.0 13 35.789411500543025 38.0 35.0 39.0 30.0 39.0 14 36.83982655578075 39.0 35.0 40.0 31.0 41.0 15 36.97727560323932 39.0 35.0 41.0 31.0 41.0 16 37.01976832917419 39.0 35.0 41.0 31.0 41.0 17 36.935334636820805 38.0 35.0 40.0 31.0 41.0 18 36.82866184043967 38.0 35.0 40.0 31.0 41.0 19 36.78084410258551 38.0 35.0 40.0 31.0 41.0 20 36.65200932068817 38.0 35.0 40.0 31.0 41.0 21 36.544247917693674 38.0 35.0 40.0 30.0 41.0 22 36.42452803257895 38.0 35.0 40.0 30.0 41.0 23 36.32749547621107 38.0 35.0 40.0 30.0 41.0 24 36.23481606808925 38.0 34.0 40.0 30.0 41.0 25 36.05963178254114 38.0 34.0 40.0 30.0 41.0 26 35.84439955569512 38.0 34.0 40.0 29.0 41.0 27 35.909495248690156 38.0 34.0 40.0 29.0 41.0 28 35.92914172209471 38.0 34.0 40.0 29.0 41.0 29 35.90617659627863 38.0 34.0 40.0 29.0 41.0 30 35.811904541769046 38.0 34.0 40.0 29.0 41.0 31 35.73771269903287 38.0 34.0 40.0 29.0 41.0 32 35.58477859530974 38.0 34.0 40.0 28.0 41.0 33 35.41809609307395 38.0 34.0 40.0 27.0 41.0 34 35.254726278281936 38.0 34.0 40.0 26.0 41.0 35 35.10007000315717 38.0 34.0 40.0 25.0 41.0 36 35.04236320092099 38.0 34.0 40.0 25.0 41.0 37 35.00398161596941 38.0 34.0 40.0 25.0 41.0 38 34.92010309168539 38.0 34.0 40.0 24.0 41.0 39 34.873612985223495 38.0 34.0 40.0 24.0 41.0 40 34.721277508620446 38.0 33.0 40.0 24.0 41.0 41 34.651155052093344 38.0 33.0 40.0 24.0 41.0 42 34.61540231364056 38.0 33.0 40.0 24.0 41.0 43 34.57763725071228 38.0 33.0 40.0 24.0 41.0 44 34.433655711435314 37.0 33.0 40.0 23.0 41.0 45 34.30437185268064 37.0 33.0 40.0 23.0 41.0 46 34.23282078637874 37.0 33.0 40.0 23.0 41.0 47 34.19345412961108 37.0 33.0 40.0 23.0 41.0 48 34.085293925915956 37.0 33.0 40.0 23.0 41.0 49 33.9523407598602 37.0 33.0 40.0 23.0 41.0 50 33.86332980690121 37.0 33.0 40.0 22.0 41.0 51 33.53439847774023 36.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 6.0 14 26.0 15 82.0 16 264.0 17 595.0 18 1341.0 19 2468.0 20 4316.0 21 6776.0 22 10401.0 23 15165.0 24 22303.0 25 31258.0 26 40456.0 27 46926.0 28 53110.0 29 61673.0 30 72838.0 31 87511.0 32 106318.0 33 130387.0 34 181199.0 35 209640.0 36 208123.0 37 256076.0 38 353629.0 39 444115.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.66000365567309 25.221204437765575 29.131070366594138 13.987721539967202 2 30.928996858592345 26.936558733415794 29.01049280433159 13.123951603660275 3 28.283107594809962 27.03587544636067 31.641725290227633 13.039291668601729 4 25.10757180223405 28.935547245313987 31.442793615950666 14.5140873365013 5 23.108966752548 33.364748830120696 29.65040602257229 13.875878394759008 6 21.198856260041918 42.152424525050094 26.38266887143236 10.266050343475625 7 90.69720673342601 2.534983470648311 5.805830926397837 0.9619788695278344 8 91.14398281748434 2.1196086810732 5.571791156253608 1.1646173451888489 9 86.39177822931636 5.149045370822872 6.631808531352509 1.827367868508251 10 37.19025307227794 42.04164655265341 11.632496632988742 9.135603742079908 11 24.589514353629703 27.449205104137686 30.08337746699349 17.87790307523912 12 26.286803318396768 25.07003511235656 30.242386464295194 18.400775104951478 13 23.517907898341612 27.357600242348116 30.50041392615455 18.624077933155718 14 18.26715982747609 31.776789202726675 30.661553269079267 19.29449770071797 15 18.508613200388403 29.6323832986016 34.64244492097909 17.21655858003091 16 22.568285033427255 27.646517715741165 33.41498237991135 16.370214870920226 17 22.198755281659384 26.899831574875044 29.76361258897921 21.137800554486358 18 21.961051317043577 27.98626523569931 31.447736017796057 18.60494742946106 19 24.122329558502912 28.93605852826351 28.381486955680717 18.560124957552866 20 25.81821249515879 28.94594333195429 28.27220022522014 16.96364394766678 21 24.84272723438105 27.778258289068305 30.081502762845236 17.297511713705408 22 23.389533271098838 25.14617366492305 30.348349855583873 21.115943208394246 23 20.542880235803697 29.202692586439838 30.3729766509859 19.88145052677056 24 20.778326034059113 28.523197546523555 32.43391561360132 18.264560805816014 25 21.082326354463095 29.850019407448624 29.96305554620571 19.104598691882575 26 20.648204523405468 32.22492870798372 27.880046202935873 19.246820565674934 27 19.49202334688375 31.127885925956853 30.58865284185976 18.791437885299636 28 18.898210807925057 30.179796909891067 32.35368679743864 18.568305484745235 29 19.683584025305098 28.972444831504575 31.680412366741557 19.663558776448774 30 20.481568888773378 28.822724141119206 31.282463804362692 19.413243165744724 31 22.648172994290245 28.99920197252962 28.722384862275284 19.630240170904848 32 22.80522207361878 29.4870937271121 28.830265564624675 18.877418634644446 33 22.034122171912927 29.334177518292215 28.646587165008476 19.985113144786386 34 20.520895068974202 29.429233539991063 29.884062330504374 20.165809060530364 35 20.22533091723735 28.946071152691673 30.009795329174615 20.818802600896362 36 22.276086827774765 29.615979637304395 28.598867423052983 19.509066111867856 37 20.437385520552084 30.727508769567756 29.008405065621034 19.826700644259123 38 20.83316113039547 30.876334714791458 27.924570426456846 20.365933728356218 39 20.68250308793598 29.85070111804799 28.590942537335373 20.875853256680657 40 22.027305065919283 28.71637728761839 29.008490279445958 20.24782736701637 41 19.52091083353181 29.08658874998562 29.562252320692007 21.830248095790562 42 20.79566704743044 29.827352530019763 28.328185708192926 21.048794714356866 43 20.721701447399425 28.942364351307624 28.66580288252806 21.67013131876489 44 20.615013738598922 29.869916835567565 29.080325533853962 20.434743891979547 45 20.608367060255123 30.194368473952476 28.166492475406223 21.030771990386178 46 21.19306171994732 30.5344568492103 27.982941896527407 20.28953953431497 47 20.68271612249828 29.554412648799318 28.79907730470376 20.96379392399864 48 20.442498350047313 29.18198562698415 29.945331070622235 20.4301849523463 49 21.020801972870476 28.458818501796095 29.717085840572604 20.803293684760828 50 19.57595896443047 30.121297619083126 29.457183674564995 20.84555974192141 51 19.442514114604926 29.99564983423781 29.025746078992366 21.536089972164906 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1196.0 1 1760.0 2 2324.0 3 12774.5 4 23225.0 5 18015.5 6 12806.0 7 12155.5 8 11505.0 9 12255.5 10 13006.0 11 13514.0 12 14022.0 13 14152.0 14 14282.0 15 14277.0 16 14272.0 17 13593.0 18 12914.0 19 13090.0 20 13266.0 21 14318.0 22 15370.0 23 17363.0 24 19356.0 25 22392.0 26 29793.5 27 34159.0 28 39745.5 29 45332.0 30 52324.5 31 59317.0 32 68279.0 33 77241.0 34 87724.0 35 98207.0 36 103361.5 37 108516.0 38 117257.5 39 125999.0 40 136942.5 41 147886.0 42 157036.0 43 166186.0 44 170191.0 45 174196.0 46 179833.0 47 185470.0 48 185897.0 49 186324.0 50 173252.5 51 160181.0 52 147451.0 53 134721.0 54 123602.0 55 112483.0 56 101724.5 57 90966.0 58 83980.0 59 76994.0 60 67880.5 61 58767.0 62 51450.0 63 44133.0 64 35819.5 65 27506.0 66 21119.0 67 14732.0 68 11481.0 69 8230.0 70 7081.0 71 5932.0 72 5020.0 73 4108.0 74 3606.5 75 2475.0 76 1845.0 77 1283.5 78 722.0 79 579.0 80 436.0 81 323.0 82 210.0 83 149.0 84 88.0 85 60.0 86 32.0 87 26.0 88 20.0 89 16.0 90 12.0 91 9.5 92 7.0 93 4.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2347037.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.063024550202993 #Duplication Level Percentage of deduplicated Percentage of total 1 75.753998519179 17.471163276238666 2 6.936210635250129 3.1993999233230563 3 2.829421282425983 1.9576503749837184 4 1.654750618000466 1.526542165096333 5 1.1117268591138056 1.2819891922430882 6 0.8279560100122145 1.145710187123989 7 0.7115142273142641 1.1486769064657307 8 0.5778915277270689 1.0662341193058962 9 0.499142936539054 1.0360571219514554 >10 7.404458159985318 40.74025728346525 >50 1.5496447242079814 24.06721436737202 >100 0.14119695587508974 4.356155382764233 >500 0.0011386605652164137 0.17078375422647185 >1k 7.591070434776092E-4 0.257707520472954 >5k 0.0 0.0 >10k+ 1.897767608694023E-4 0.5744584249673099 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13125 0.5592157260409615 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020749566368148436 0.0 2 0.0 0.0 0.0 0.07319867560673309 0.0 3 0.0 0.0 0.0 0.12172794889897347 0.0 4 0.0 0.0 0.0 0.20728262911918305 0.0 5 0.0 0.0 0.0 0.39155752550982365 0.0 6 0.0 0.0 0.0 0.7046757251803017 0.0 7 0.0 0.0 0.0 0.8637699363069266 0.0 8 0.0 0.0 0.0 1.162870461777978 0.0 9 0.0 0.0 0.0 1.3063705429441461 0.0 10 0.0 0.0 0.0 1.5253274660774414 0.0 11 0.0 0.0 0.0 1.7921745588160731 0.0 12 0.0 0.0 0.0 1.9951538897767696 0.0 13 0.0 0.0 0.0 2.1137289271536837 0.0 14 0.0 0.0 0.0 2.1824112700396285 0.0 15 0.0 0.0 0.0 2.2578255050942957 0.0 16 0.0 0.0 0.0 2.3799369162054114 0.0 17 0.0 0.0 0.0 2.5331087665000593 0.0 18 0.0 0.0 0.0 2.717085414503478 0.0 19 0.0 0.0 0.0 2.842392344049114 0.0 20 0.0 0.0 0.0 2.9654411072343554 0.0 21 0.0 0.0 0.0 3.117590391629957 0.0 22 0.0 0.0 0.0 3.2980306658991743 0.0 23 0.0 0.0 0.0 3.4908269447818676 0.0 24 0.0 0.0 0.0 3.642464946227946 0.0 25 0.0 0.0 0.0 3.77237342231929 0.0 26 0.0 0.0 0.0 3.899427235275797 0.0 27 0.0 0.0 0.0 4.036664100310306 0.0 28 0.0 0.0 0.0 4.182379740924408 0.0 29 0.0 0.0 0.0 4.3487171271692775 0.0 30 0.0 0.0 0.0 4.539340453516497 0.0 31 0.0 0.0 0.0 4.709043785845728 0.0 32 0.0 0.0 0.0 4.8907622674887525 0.0 33 0.0 0.0 0.0 5.066174926087658 0.0 34 0.0 0.0 0.0 5.24414399943418 0.0 35 0.0 0.0 0.0 5.440647079700916 0.0 36 0.0 0.0 0.0 5.6257741143407625 0.0 37 0.0 0.0 0.0 5.815289660964016 0.0 38 0.0 0.0 0.0 6.018439419574553 0.0 39 0.0 0.0 0.0 6.258188515988457 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACGCG 35 1.2126475E-7 45.000004 1 TAGGACG 80 0.0 42.1875 1 CGTTTTT 8350 0.0 41.470062 1 TTTCGCG 60 3.6379788E-12 41.249996 1 TATAGCG 150 0.0 40.5 1 TACGGGA 1380 0.0 40.271736 4 TAGGGAC 3265 0.0 39.90046 5 GCGCGAC 425 0.0 39.705883 9 CCGAACG 40 3.4602817E-7 39.375 1 CGTAAGG 310 0.0 39.193546 2 AGGGCGA 1825 0.0 38.58904 6 CGCGAAA 35 6.2510717E-6 38.57143 23 GGGCGAT 3535 0.0 38.50778 7 CGGGGTA 480 0.0 38.437496 6 ATAGGGA 4125 0.0 38.236362 4 CGTTAGG 465 0.0 38.225803 2 TTAGGGA 3535 0.0 37.934937 4 AGGGATC 3535 0.0 37.934937 6 GAGGGAT 4395 0.0 37.88396 5 CGAGGGA 1685 0.0 37.789318 4 >>END_MODULE