##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547987_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1782252 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.786574513592914 31.0 31.0 31.0 30.0 33.0 2 31.118534303790934 31.0 31.0 33.0 30.0 34.0 3 31.26175815765672 31.0 31.0 34.0 28.0 34.0 4 35.160607478628165 35.0 35.0 37.0 33.0 37.0 5 34.9871740921037 35.0 35.0 37.0 32.0 37.0 6 35.026923802021265 36.0 35.0 37.0 32.0 37.0 7 35.4826326467862 35.0 35.0 37.0 35.0 37.0 8 35.58180324667892 37.0 35.0 37.0 35.0 37.0 9 37.407094507398504 39.0 37.0 39.0 35.0 39.0 10 36.43141261729542 38.0 35.0 39.0 32.0 39.0 11 35.991046159577884 38.0 35.0 39.0 31.0 39.0 12 35.63578158419797 37.0 35.0 39.0 30.0 39.0 13 35.472732251107026 37.0 35.0 39.0 30.0 39.0 14 36.51239274805134 38.0 35.0 40.0 30.0 41.0 15 36.69393273229599 38.0 35.0 40.0 31.0 41.0 16 36.78356932689653 38.0 35.0 40.0 31.0 41.0 17 36.71203118302014 38.0 35.0 40.0 31.0 41.0 18 36.63638868128637 38.0 35.0 40.0 31.0 41.0 19 36.56461207506009 38.0 35.0 40.0 30.0 41.0 20 36.452598173546725 38.0 35.0 40.0 30.0 41.0 21 36.334552016213195 38.0 34.0 40.0 30.0 41.0 22 36.207159256940095 38.0 34.0 40.0 30.0 41.0 23 36.130856354769136 38.0 34.0 40.0 30.0 41.0 24 36.031980326014505 38.0 34.0 40.0 30.0 41.0 25 35.834227707417355 38.0 34.0 40.0 29.0 41.0 26 35.59232196120414 38.0 34.0 40.0 29.0 41.0 27 35.65802086349181 38.0 34.0 40.0 29.0 41.0 28 35.691444307539 38.0 34.0 40.0 29.0 41.0 29 35.656923375594474 38.0 34.0 40.0 29.0 41.0 30 35.59457809557795 38.0 34.0 40.0 29.0 41.0 31 35.49680348233583 38.0 34.0 40.0 28.0 41.0 32 35.355660703424654 38.0 34.0 40.0 27.0 41.0 33 35.20357502754941 38.0 34.0 40.0 27.0 41.0 34 35.06519616754533 38.0 34.0 40.0 26.0 41.0 35 34.913942584999205 38.0 33.0 40.0 25.0 41.0 36 34.830079584705196 38.0 33.0 40.0 25.0 41.0 37 34.75951941700725 38.0 33.0 40.0 24.0 41.0 38 34.68974140581691 37.0 33.0 40.0 24.0 41.0 39 34.66399196073282 37.0 33.0 40.0 24.0 41.0 40 34.50596492527431 37.0 33.0 40.0 24.0 41.0 41 34.449390995212795 37.0 33.0 40.0 23.0 41.0 42 34.3992763088497 37.0 33.0 40.0 23.0 41.0 43 34.35132854388717 37.0 33.0 40.0 23.0 41.0 44 34.20755931260001 37.0 33.0 40.0 23.0 41.0 45 34.06842017851572 37.0 33.0 40.0 23.0 41.0 46 34.01578340212271 37.0 33.0 40.0 23.0 41.0 47 33.972823708431804 36.0 33.0 40.0 23.0 41.0 48 33.87383602318864 36.0 33.0 40.0 23.0 41.0 49 33.719307931762735 36.0 32.0 40.0 22.0 41.0 50 33.59020553771296 36.0 32.0 40.0 22.0 41.0 51 33.2553611947132 35.0 31.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 4.0 13 5.0 14 30.0 15 74.0 16 178.0 17 467.0 18 1092.0 19 2033.0 20 3525.0 21 5598.0 22 8505.0 23 12418.0 24 17917.0 25 24800.0 26 31389.0 27 36711.0 28 41609.0 29 49495.0 30 58900.0 31 70646.0 32 84965.0 33 105255.0 34 148320.0 35 173087.0 36 157623.0 37 188393.0 38 253950.0 39 305235.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.15597345381012 25.2559121830134 29.35022656728678 12.237887795889694 2 30.811074977051504 27.319930066006375 28.80512968985306 13.063865267089053 3 28.721976465729878 26.052095887674692 31.246310847175373 13.979616799420057 4 24.71395739771929 28.978113083896105 31.236379591662683 15.071549926721922 5 22.720636587867485 33.52477651869657 29.93970549619246 13.814881397243486 6 20.789428206561137 42.95223122207185 26.73875523775538 9.519585333611632 7 90.9493158094366 3.0468194172316823 5.028918469442032 0.9749463038896856 8 91.71890394848764 2.331825129106322 4.612759587308641 1.3365113350973936 9 87.46198629598958 5.116672614198216 5.726238489282099 1.695102600530116 10 41.25286435363798 33.74455464210448 13.6500337774905 11.352547226767035 11 29.183359031158336 27.990317867506953 25.147566112985142 17.67875698834957 12 28.368378882447598 25.289072476843906 28.37903955220698 17.963509088501514 13 23.024746219950938 31.154685196032883 28.290331558051275 17.530237025964905 14 19.158401842163734 34.799848730707 27.89252024966166 18.149229177467607 15 18.420964038755464 29.77614837856824 35.16478028920714 16.63810729346916 16 20.705994438496912 27.27835345394479 34.44271629376766 17.57293581379064 17 20.687422429600304 27.730983048412906 28.243480719898194 23.338113802088596 18 21.863687065577707 28.58838144100834 30.599208192780818 18.948723300633134 19 24.876448448367572 30.33987337368678 26.245446771836978 18.538231406108675 20 26.392900667245712 28.7476181819406 26.766472979129773 18.093008171683913 21 23.734410173196608 29.259386439179195 28.448333905642976 18.557869481981225 22 23.23666911300983 27.036019597677548 27.70186258733333 22.025448701979293 23 20.354304554013687 31.953954884045576 27.24581035678456 20.445930205156174 24 20.220148441410082 29.664211346094717 32.01769446744905 18.097945745046154 25 20.61717422676479 29.889039260441287 30.064603658741863 19.429182854052065 26 20.210553838626634 34.15145557418368 26.86679549244439 18.7711950947453 27 19.374140132820724 33.5835785287378 28.397499343527176 18.6447819949143 28 18.96645367770663 31.168544066720084 31.691253537659097 18.17374871791419 29 19.086582593258417 29.752526578732976 31.019799669182586 20.141091158826026 30 20.145411535517983 31.071812515850734 29.83882189499577 18.94395405363551 31 23.43978292632018 30.44075697488346 27.14952767622087 18.969932422575482 32 23.530454728063148 31.35645239842626 26.87397741733492 18.239115456175668 33 23.215011120761822 31.19233419291997 26.051927561310073 19.540727125008136 34 20.249886099159937 31.348765494441867 27.818119996498815 20.583228409899384 35 20.697129249960163 30.577550200532812 28.25964005090189 20.465680498605135 36 23.801067413586853 30.64555405184003 26.554830630011917 18.998547904561196 37 20.57879581563101 33.355440195887006 27.298159856181954 18.767604132300033 38 20.829882642858585 33.249562912539865 26.11106622408055 19.809488220521004 39 20.625253892266638 32.409221591559444 26.730282810736078 20.23524170543784 40 22.37859741495591 29.963944492698 27.063344577534494 20.5941135148116 41 19.2105830151965 29.50076644604691 28.426395369453928 22.86225516930266 42 21.431481070017032 30.40619396134778 26.27080794410667 21.891517024528518 43 20.983732940122945 30.57878459387337 26.96874516061702 21.468737305386668 44 20.134077560300113 32.30311987305948 27.6577049710142 19.90509759562621 45 20.03044462848127 33.47865509479019 25.579715999757607 20.911184276970936 46 21.163112736021617 32.64605678658236 26.255546353714287 19.935284123681722 47 21.296876087107773 30.947194897242365 27.07630570761037 20.679623308039492 48 21.33587169491183 30.102701525934606 28.27417222704758 20.28725455210599 49 20.83678402380808 29.831864405258067 28.646959015896744 20.68439255503711 50 19.899318390440857 32.16716827923324 27.714992043773833 20.218521286552072 51 19.439899632599655 32.26075773796298 26.727533480113923 21.57180914932344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 936.0 1 1286.5 2 1637.0 3 7383.5 4 13130.0 5 10335.5 6 7541.0 7 7402.5 8 7264.0 9 8330.0 10 9396.0 11 10499.5 12 11603.0 13 11718.0 14 11833.0 15 11533.5 16 11234.0 17 11134.0 18 11034.0 19 10643.5 20 10253.0 21 10805.0 22 11357.0 23 12239.0 24 13121.0 25 14570.0 26 19731.0 27 23443.0 28 27307.0 29 31171.0 30 35522.5 31 39874.0 32 47434.0 33 54994.0 34 61545.0 35 68096.0 36 73274.5 37 78453.0 38 85326.0 39 92199.0 40 104507.5 41 116816.0 42 129632.5 43 142449.0 44 140826.5 45 139204.0 46 143487.5 47 147771.0 48 145902.5 49 144034.0 50 136464.5 51 128895.0 52 119085.5 53 109276.0 54 97839.0 55 86402.0 56 78264.5 57 70127.0 58 63221.5 59 56316.0 60 49885.0 61 43454.0 62 36548.0 63 29642.0 64 23372.0 65 17102.0 66 13470.5 67 9839.0 68 8087.0 69 6335.0 70 5068.0 71 3801.0 72 3177.0 73 2553.0 74 2129.5 75 1294.5 76 883.0 77 629.5 78 376.0 79 391.0 80 406.0 81 268.5 82 131.0 83 97.5 84 64.0 85 58.0 86 52.0 87 32.5 88 13.0 89 9.5 90 6.0 91 5.5 92 5.0 93 5.5 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1782252.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.626463515003397 #Duplication Level Percentage of deduplicated Percentage of total 1 77.74333005817824 19.145432812125936 2 7.661012411021987 3.7732728525604227 3 2.8354152855910217 2.0947875324147067 4 1.5825868261911817 1.5589406693808863 5 0.9988024455189191 1.2298485991633912 6 0.6928310469144802 1.0237187099340632 7 0.5810057002660053 1.0015680975726846 8 0.47398292467357406 0.9338018560966699 9 0.3946884698614539 0.874780308255205 >10 5.204832530968208 30.300956180945978 >50 1.4484449646446629 25.176786727097166 >100 0.3802763174799409 11.89766898817914 >500 0.002093264017749983 0.35471914436076823 >1k 4.651697817222184E-4 0.1756126104650598 >5k 2.325848908611092E-4 0.4581049114479936 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7998 0.4487580880818201 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024968410752239302 0.0 2 0.0 0.0 0.0 0.08371431200526076 0.0 3 0.0 0.0 0.0 0.13449276533284854 0.0 4 0.0 0.0 0.0 0.22982159649701614 0.0 5 0.0 0.0 0.0 0.4179543633560237 0.0 6 0.0 0.0 0.0 0.7137037859965931 0.0 7 0.0 0.0 0.0 0.8639070120274799 0.0 8 0.0 0.0 0.0 1.2279408299163082 0.0 9 0.0 0.0 0.0 1.372140415609016 0.0 10 0.0 0.0 0.0 1.6066751503154435 0.0 11 0.0 0.0 0.0 1.8999557862748926 0.0 12 0.0 0.0 0.0 2.1205194327177077 0.0 13 0.0 0.0 0.0 2.235430230966216 0.0 14 0.0 0.0 0.0 2.2966449189003577 0.0 15 0.0 0.0 0.0 2.3705963017575518 0.0 16 0.0 0.0 0.0 2.5223705738582423 0.0 17 0.0 0.0 0.0 2.711344972540359 0.0 18 0.0 0.0 0.0 2.9249511292454713 0.0 19 0.0 0.0 0.0 3.0571434342618216 0.0 20 0.0 0.0 0.0 3.1824343583286763 0.0 21 0.0 0.0 0.0 3.358110974205668 0.0 22 0.0 0.0 0.0 3.5625152896447867 0.0 23 0.0 0.0 0.0 3.7932907355413263 0.0 24 0.0 0.0 0.0 3.9750832093329116 5.610878820727933E-5 25 0.0 0.0 0.0 4.13185116358405 5.610878820727933E-5 26 0.0 0.0 0.0 4.279585602933817 5.610878820727933E-5 27 0.0 0.0 0.0 4.431640418975543 5.610878820727933E-5 28 0.0 0.0 0.0 4.601145068149735 5.610878820727933E-5 29 0.0 0.0 0.0 4.786809048327622 5.610878820727933E-5 30 0.0 0.0 0.0 5.001705707161501 5.610878820727933E-5 31 0.0 0.0 0.0 5.206053913812412 5.610878820727933E-5 32 0.0 0.0 0.0 5.40759668105296 5.610878820727933E-5 33 0.0 0.0 0.0 5.618790159865159 5.610878820727933E-5 34 0.0 0.0 0.0 5.837502216297135 5.610878820727933E-5 35 5.610878820727933E-5 0.0 0.0 6.069175402804991 5.610878820727933E-5 36 5.610878820727933E-5 0.0 0.0 6.300287501430774 5.610878820727933E-5 37 5.610878820727933E-5 0.0 0.0 6.538244872217846 5.610878820727933E-5 38 5.610878820727933E-5 0.0 0.0 6.779624879085562 5.610878820727933E-5 39 5.610878820727933E-5 0.0 0.0 7.050518108550306 5.610878820727933E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGCG 35 1.2124292E-7 45.000004 1 ACGTGCG 30 2.166178E-6 45.000004 1 TATTACG 35 1.2124292E-7 45.000004 1 TTCGGTC 20 7.034333E-4 45.0 33 TCGCGAT 20 7.034333E-4 45.0 40 CGACGGT 140 0.0 41.785717 28 CGTTTTT 5105 0.0 41.606266 1 TATACGG 130 0.0 41.53846 2 TACGACG 45 1.929402E-8 40.0 1 TAGGGCG 685 0.0 39.744526 5 ACGGGAC 555 0.0 39.72973 5 GTACGTC 40 3.459645E-7 39.375 15 AGGGCGA 1530 0.0 38.97059 6 TAAGGGA 2525 0.0 38.67327 4 CGGGATC 355 0.0 38.661972 6 GCCGATC 35 6.250224E-6 38.57143 9 GGGCGAT 2920 0.0 38.527397 7 TGGGCGA 880 0.0 38.352272 6 ACGGGTC 190 0.0 37.894737 5 ATCGCCA 95 0.0 37.894737 24 >>END_MODULE